ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL)

ACS Synthetic Biology
Matthew CrowtherAnil Wipat

Abstract

The Synthetic Biology Open Language (SBOL) is an emerging synthetic biology data exchange standard, designed primarily for unambiguous and efficient machine-to-machine communication. However, manual editing of SBOL is generally difficult for nontrivial designs. Here, we describe ShortBOL, a lightweight SBOL scripting language that bridges the gap between manual editing, visual design tools, and direct programming. ShortBOL is a shorthand textual language developed to enable users to create SBOL designs quickly and easily, without requiring strong programming skills or visual design tools.

Citations

Oct 6, 2020·Frontiers in Bioengineering and Biotechnology·James Alastair McLaughlinChris J Myers
May 28, 2021·Frontiers in Bioengineering and Biotechnology·Yerko OrtizMartín Gutiérrez

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