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SIANN: Strain Identification by Alignment to Near Neighbors

bioRxiv

Jan 10, 2014

Samuel S MinotDana R. Kadavy

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Abstract

Next-generation sequencing is increasingly being used to study samples composed of mixtures of organisms, such as in clinical applications where the presence of a pathogen at very low abundance may be highly important. We present an analytical method (SIANN: Strain Identification by Ali...read more

Mentioned in this Paper

Species
Proximal
Neighbor
Organism
Genome
Sequestering of TGFbeta in Extracellular Matrix
Massively-Parallel Sequencing
Specialty Physician
Pathogenic Organism
11
25
Paper Details
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  • SIANN: Strain Identification by Alignment to Near Neighbors

    bioRxiv

    Jan 10, 2014

    Samuel S MinotDana R. Kadavy

    PMID: 990001727

    DOI: 10.1101/001727

    Abstract

    Next-generation sequencing is increasingly being used to study samples composed of mixtures of organisms, such as in clinical applications where the presence of a pathogen at very low abundance may be highly important. We present an analytical method (SIANN: Strain Identification by Ali...read more

    Mentioned in this Paper

    Species
    Proximal
    Neighbor
    Organism
    Genome
    11
    25
    Paper Details
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