Sigpep: calculating unique peptide signature transition sets in a complete proteome background

Proteomics
Kenny HelsensLennart Martens

Abstract

We have created a new software platform called sigpep that analyzes transition redundancy in selected reaction monitoring assays. Building on this platform, we also created a web application to generate transition sets with unique signatures for targeted peptides. The platform has been made available under the permissive Apache 2.0 open-source license, and the web application can be accessed from http://iomics.ugent.be/sigpep.

References

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Dec 8, 2005·Molecular & Cellular Proteomics : MCP·Leigh Anderson, Christie L Hunter
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Feb 18, 2011·Proteomics·Harald BarsnesLennart Martens
Oct 5, 2011·Journal of Proteome Research·Kenny HelsensLennart Martens
Dec 14, 2011·Molecular & Cellular Proteomics : MCP·Eric W DeutschMi-Youn Brusniak

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Citations

Feb 5, 2013·Amino Acids·Harald Barsnes, Lennart Martens
Mar 8, 2013·Biochimica Et Biophysica Acta·Yasset Perez-RiverolJuan Antonio Vizcaíno
Nov 20, 2012·Journal of Proteomics·Sebastien GallienBruno Domon
Aug 11, 2021·Analytical Chemistry·Premy ShanthamoorthyHannes Röst

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