Mar 16, 2013

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

Nature Protocols
Marie-Theres Gansauge, Matthias Meyer

Abstract

This protocol describes a method for converting short single-stranded and double-stranded DNA into libraries compatible with high-throughput sequencing using Illumina technology. This method has primarily been developed to improve sequence retrieval from ancient DNA, but it is also applicable to the sequencing of short or degraded DNA from other sources, and it can also be used for sequencing oligonucleotides. Single-stranded library preparation is performed by ligating a biotinylated adapter oligonucleotide to the 3' ends of heat-denatured DNA. The resulting strands are then immobilized on streptavidin-coated beads and copied with a polymerase. A second adapter is attached by blunt-end ligation, and library preparation is completed by PCR amplification. We estimate that intact DNA strands are recovered in the library with ∼50% efficiency. Libraries can be generated from up to 12 DNA or oligonucleotide samples in parallel within 2 d.

  • References32
  • Citations105

Citations

Mentioned in this Paper

Polymerase
Ancient DNA
Gene Amplification Technique
Sequencing
Oligonucleotide Primers
Sequence Determinations, DNA
Oligonucleotides
High-Throughput Nucleotide Sequencing
cDNA Library
Gene Amplification Abnormality

Related Feeds

Ancient DNA

Ancient DNA sequences are able to offer valuable insights into molecular evolutionary processes, but are notoriously difficult to analyze due to molecular damage and exogenous dna contamination. Discover the latest research on Ancient DNA here.

Related Papers

Proceedings of the National Academy of Sciences of the United States of America
Qiaomei FuSvante Pääbo
Proceedings of the National Academy of Sciences of the United States of America
Jesse DabneyMatthias Meyer
© 2020 Meta ULC. All rights reserved