Nov 21, 2018

SIR proteins create compact heterochromatin fibers

Proceedings of the National Academy of Sciences of the United States of America
Sarah G SwygertCraig L Peterson

Abstract

Heterochromatin is a silenced chromatin region essential for maintaining genomic stability and driving developmental processes. The complicated structure and dynamics of heterochromatin have rendered it difficult to characterize. In budding yeast, heterochromatin assembly requires the SIR proteins-Sir3, believed to be the primary structural component of SIR heterochromatin, and the Sir2-4 complex, responsible for the targeted recruitment of SIR proteins and the deacetylation of lysine 16 of histone H4. Previously, we found that Sir3 binds but does not compact nucleosomal arrays. Here we reconstitute chromatin fibers with the complete complement of SIR proteins and use sedimentation velocity, molecular modeling, and atomic force microscopy to characterize the stoichiometry and conformation of SIR chromatin fibers. In contrast to fibers with Sir3 alone, our results demonstrate that SIR arrays are highly compact. Strikingly, the condensed structure of SIR heterochromatin fibers requires both the integrity of H4K16 and an interaction between Sir3 and Sir4. We propose a model in which a dimer of Sir3 bridges and stabilizes two adjacent nucleosomes, while a Sir2-4 heterotetramer interacts with Sir3 associated with a nucleosomal trime...Continue Reading

  • References1
  • Citations

References

  • References1
  • Citations

Citations

  • This paper may not have been cited yet.

Mentioned in this Paper

TMBIM4
Nucleosomes
Heterochromatin Assembly
Molecular Modeling
Genomic Stability
Yeasts
Histone H4
Gene Expression Regulation, Fungal
ABA3 protein, Arabidopsis
Nucleosome Location

Related Feeds

AFM in situ DNA

AFM in situ DNA describes in situ analysis (or study) of DNA using atomic force microscopy. Discover the latest research on AFM in situ DNA here.