Apr 9, 2020

Phage and bacteria diversification through a prophage acquisition ratchet

BioRxiv : the Preprint Server for Biology
M. AnthenelliAntoni Luque

Abstract

Lysogeny is prevalent in the microbial-dense mammalian gut. This contrasts the classical view of lysogeny as a refuge used by phages under poor host growth conditions. Here we hypothesize that as carrying capacity increases, lysogens escape phage top-down control through superinfection exclusion, overcoming the canonical trade-off between competition and resistance. This hypothesis was tested by developing an ecological model that combined lytic and lysogenic communities and an evolutionary model that estimated the accumulation of prophages in bacterial genomes. The ecological model sampled phage-bacteria traits stochastically for communities ranging from 1 to 1000 phage-bacteria pairs, and it included a fraction of escaping lysogens proportional to the increase in carrying capacity. The evolutionary model introduced new prophages at each evolutionary step and estimated the distribution of prophages per bacteria using combinatorics. The ecological model recovered the range of abundances and sublinear relationship between phage and bacteria observed across eleven ecosystems. The evolutionary model predicted an increase in the number of prophages per genome as bacterial abundances increased, in agreement with the distribution of ...Continue Reading

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Mentioned in this Paper

Real-Time Polymerase Chain Reaction
Study
ELOVL3
TYR
MC1R Protein
Genes
Coating Excipient
TRPM1 gene
Regulation of Biological Process
PMEL gene

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