SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming

Database : the Journal of Biological Databases and Curation
Lars VogtPeter Grobe

Abstract

We introduce Semantic Ontology-Controlled application for web Content Management Systems (SOCCOMAS), a development framework for FAIR ('findable', 'accessible', 'interoperable', 'reusable') Semantic Web Content Management Systems (S-WCMSs). Each S-WCMS run by SOCCOMAS has its contents managed through a corresponding knowledge base that stores all data and metadata in the form of semantic knowledge graphs in a Jena tuple store. Automated procedures track provenance, user contributions and detailed change history. Each S-WCMS is accessible via both a graphical user interface (GUI), utilizing the JavaScript framework AngularJS, and a SPARQL endpoint. As a consequence, all data and metadata are maximally findable, accessible, interoperable and reusable and comply with the FAIR Guiding Principles. The source code of SOCCOMAS is written using the Semantic Programming Ontology (SPrO). SPrO consists of commands, attributes and variables, with which one can describe an S-WCMS. We used SPrO to describe all the features and workflows typically required by any S-WCMS and documented these descriptions in a SOCCOMAS source code ontology (SC-Basic). SC-Basic specifies a set of default features, such as provenance tracking and publication life...Continue Reading

References

Mar 10, 2001·Bioinformatics·A Brazma
Sep 10, 2005·Nature Biotechnology·Xiaoshu WangJonas S Almeida
Aug 12, 2006·Omics : a Journal of Integrative Biology·Susanna-Assunta SansoneUNKNOWN RSBI Members
Sep 11, 2007·Colorectal Disease : the Official Journal of the Association of Coloproctology of Great Britain and Ireland·Najib Haboubi
Sep 25, 2009·BMC Bioinformatics·Damian D G GesslerRex T Nelson
Mar 1, 2009·Revista electrônica de comunicação, informação & inovação em saúde : RECIIS·Stefan SchulzBarry Smith
Mar 15, 2011·Forensic Science International. Genetics·Lutz Roewer, Walther Parson
Oct 3, 2012·Journal of Biomedical Informatics·Cui TaoChristopher G Chute
Oct 13, 2012·Database : the Journal of Biological Databases and Curation·Georgios V GkoutosRobert Hoehndorf
Mar 20, 2013·Journal of Morphology·Lars VogtAndrew R Deans
Nov 26, 2013·Journal of Biomedical Semantics·Paolo CiccareseTim Clark
Feb 21, 2014·Journal of Cell Communication and Signaling·B PerbalA Leask
Mar 16, 2016·Scientific Data·Mark D WilkinsonBarend Mons
Apr 30, 2016·PloS One·Anita BandrowskiJie Zheng
May 31, 2016·AI Matters·Mark A Musen, UNKNOWN Protégé Team
Sep 8, 2016·PeerJ·Michel DumontierAtsuko Yamaguchi
Aug 8, 2018·Journal of Integrative Bioinformatics·Marco BrandiziKeywan Hassani-Pak
Aug 17, 2018·Wiener klinische Wochenschrift·Miklos RohlaThomas W Weiss

❮ Previous
Next ❯

Software Mentioned

YASGUI
RDF
MediaWiki
MySQL
Apache Stanbol
AngularJS
SPARQL
Protégé
PostgreSQL
SOCCOMAS

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

© 2021 Meta ULC. All rights reserved