Spatial capture-recapture with partial identity: an application to camera traps

BioRxiv : the Preprint Server for Biology
Ben AugustineKevin Crooks


Camera trapping surveys frequently capture individuals whose identity is only known from a single flank. The most widely used methods for incorporating these partial identity individuals into density analyses do not use all of the partial identity capture histories, reducing precision, and while not previously recognized, introducing bias. Here, we present the spatial partial identity model (SPIM), which uses the spatial location where partial identity samples are captured to probabilistically resolve their complete identities, allowing all partial identity samples to be used in the analysis. We show that the SPIM out-performs other analytical alternatives. We then apply the SPIM to an ocelot data set collected on a trapping array with double-camera stations and a bobcat data set collected on a trapping array with single-camera stations. The SPIM improves inference in both cases and in the ocelot example, individual sex determined from photographs is used to further resolve partial identities, one of which is resolved to near certainty. The SPIM opens the door for the investigation of trapping designs that deviate from the standard 2 camera design, the combination of other data types between which identities cannot be determini...Continue Reading

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