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SplitMEM: Graphical pan-genome analysis with suffix skips

bioRxiv

Apr 6, 2014

Shoshana MarcusMichael C Schatz

Abstract

Motivation With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. One of the most sophisticated data structures for r...read more

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Matching Test
Genome
Trees (plant)
Nucleic Acid Sequencing
Genomics
Sequencing
OSR1 gene
Comparative Genomic Analysis
Tributyl phosphate
Bacillus anthracis
53
47
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SplitMEM: Graphical pan-genome analysis with suffix skips

bioRxiv

Apr 6, 2014

Shoshana MarcusMichael C Schatz

PMID: 990003954

DOI: 10.1101/003954

Abstract

Motivation With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. One of the most sophisticated data structures for r...read more

Mentioned in this Paper

Matching Test
Genome
Trees (plant)
Nucleic Acid Sequencing
Genomics
Sequencing
OSR1 gene
Comparative Genomic Analysis
Tributyl phosphate
Bacillus anthracis
53
47

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