SRLS analysis of 15N relaxation from bacteriophage T4 lysozyme: a tensorial perspective that features domain motion

The Journal of Physical Chemistry. B
Eva Meirovitch

Abstract

Bacteriophage T4L lysozyme (T4L) comprises two domains connected by a helical linker. Several methods detected ns domain motion associated with the binding of the peptidoglycan substrate. An ESR study of nitroxide-labeled T4L, based on the slowly relaxing local structure (SRLS) approach, detected ns local motion involving the nitroxide and the helix housing it. (15)N−H spin relaxation data from T4L acquired at magnetic fields of 11.7 and 18.8 T, and 298 K, were analyzed previously with the model-free (MF) method. The results did not detect domain motion. SRLS is the generalization of MF. Here, we apply it to the same data analyzed previously with MF. The restricted local N−H motion is described in terms of tilted axial local ordering (S) and local diffusion (D(2)) tensors; dynamical coupling to the global tumbling is accounted for. We find that D(2,⊥) is 1.62 × 10(7) (1.56 × 10(7)) s(−1) for the N-terminal (C-terminal) domain. This dynamic mode represents domain motion. For the linker D(2,⊥) is the same as the rate of global tumbling, given by (1.46 ± 0.04) × 10(7) s(−1). D(2,∥) is 1.3 × 10(9), 1.8 × 10(9) and 5.3 × 10(9) s(−1) for the N-terminal domain, the C-terminal domain, and the linker, respectively. This dynamic mode rep...Continue Reading

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Citations

Dec 18, 2013·The Journal of Chemical Physics·Yury E Shapiro, Eva Meirovitch
Sep 7, 2013·The Journal of Chemical Physics·Yury E Shapiro, Eva Meirovitch
Aug 29, 2014·The Journal of Physical Chemistry. B·Michelle L Gill, Arthur G Palmer
Nov 10, 2015·The Journal of Physical Chemistry. B·Eva MeirovitchJordan H Chill
Mar 5, 2016·The Journal of Physical Chemistry. B·Oren TchaicheeyanEva Meirovitch

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