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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

bioRxiv

Jun 26, 2014

Michael InouyeKathryn E Holt

Abstract

Rapid molecular typing of bacterial pathogens is critical for public health epidemiology, surveillance and infection control, yet routine use of whole genome sequencing (WGS) for these purposes poses significant challenges. Here we present SRST2, a read mapping-based tool for fast and a...read more

Mentioned in this Paper

Hospitals
Hospitals, Public
Dual-Energy X-Ray Absorptiometry
Detection
Public Health and Epidemiology Informatics Shared Resource
Resistance Process
Locus
Antibiotics
Virulence
Infection Surveillance
15
23
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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

bioRxiv

Jun 26, 2014

Michael InouyeKathryn E Holt

PMID: 990006627

DOI: 10.1101/006627

Abstract

Rapid molecular typing of bacterial pathogens is critical for public health epidemiology, surveillance and infection control, yet routine use of whole genome sequencing (WGS) for these purposes poses significant challenges. Here we present SRST2, a read mapping-based tool for fast and a...read more

Mentioned in this Paper

Hospitals
Hospitals, Public
Dual-Energy X-Ray Absorptiometry
Detection
Public Health and Epidemiology Informatics Shared Resource
Resistance Process
Locus
Antibiotics
Virulence
Infection Surveillance
15
23

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