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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

bioRxiv

Jun 26, 2014

Michael InouyeKathryn Elizabeth Holt

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Abstract

Rapid molecular typing of bacterial pathogens is critical for public health epidemiology, surveillance and infection control, yet routine use of whole genome sequencing (WGS) for these purposes poses significant challenges. Here we present SRST2, a read mapping-based tool for fast and a...read more

15
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  • SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

    bioRxiv

    Jun 26, 2014

    Michael InouyeKathryn Elizabeth Holt

    PMID: 990006627

    DOI: 10.1101/006627

    Abstract

    Rapid molecular typing of bacterial pathogens is critical for public health epidemiology, surveillance and infection control, yet routine use of whole genome sequencing (WGS) for these purposes poses significant challenges. Here we present SRST2, a read mapping-based tool for fast and a...read more

    15

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