Ssecrett and NeuroTrace: interactive visualization and analysis tools for large-scale neuroscience data sets.

IEEE Computer Graphics and Applications
Wan-Ki JeongHanspeter Pfister

Abstract

Data sets imaged with modern electron microscopes can range from tens of terabytes to about one petabyte. Two new tools, Ssecrett and NeuroTrace, support interactive exploration and analysis of large-scale optical-and electron-microscopy images to help scientists reconstruct complex neural circuits of the mammalian nervous system.

References

Oct 6, 2004·IEEE Transactions on Pattern Analysis and Machine Intelligence·David R MartinJitendra Malik
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Oct 5, 2005·PLoS Computational Biology·Olaf SpornsRolf Kötter
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Oct 17, 2009·IEEE Transactions on Visualization and Computer Graphics·Won-Ki JeongRoss T Whitaker

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Citations

Feb 23, 2011·Neuroinformatics·Ju Lu
Mar 13, 2012·Journal of Neuroscience Methods·Roy Ben-ShalomAlon Korngreen
Jul 19, 2011·Journal of Molecular Graphics & Modelling·Robert M Farber
Aug 31, 2010·Current Opinion in Neurobiology·Viren JainSrinivas C Turaga
Dec 20, 2014·Microscopy·Shin-ya Takemura
Sep 21, 2013·IEEE Transactions on Visualization and Computer Graphics·Johanna BeyerMarkus Hadwiger
Sep 12, 2015·IEEE Transactions on Visualization and Computer Graphics·Daniel HaehnHanspeter Pfister
Sep 12, 2015·IEEE Transactions on Visualization and Computer Graphics·Ali K Al-AwamiMarkus Hadwiger
Sep 20, 2011·IEEE Transactions on Bio-medical Engineering·Sylvain JaumeR Clay Reid
May 1, 2012·Computing in Science & Engineering·Chris R Johnson
Mar 7, 2014·Current Opinion in Neurobiology·Stephen M PlazaDmitri B Chklovskii
Jan 10, 2012·Current Opinion in Neurobiology·Moritz Helmstaedter, Partha P Mitra
Oct 14, 2014·Frontiers in Neural Circuits·William M DeBelloDouglas J Totten
Nov 3, 2016·Journal of Neurophysiology·Mara Almog, Alon Korngreen
Jul 12, 2011·Nature Neuroscience·Moritz HelmstaedterWinfried Denk
Aug 22, 2017·Frontiers in Neural Circuits·Yuxin LiAnan Li
Sep 27, 2018·Scientific Reports·Ali ShahbaziWalter J Scheirer

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