journal cover

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

BMC Bioinformatics

Aug 2, 2018

Igor SaggeseFlavio Mignone

Abstract

De novo assembly of RNA-seq data allows the study of transcriptome in absence of a reference genome either if data is obtained from a single organism or from a mixed sample as in metatranscriptomics studies. Given the high number of sequences obtained from NGS approaches, a critical ste...read more

Mentioned in this Paper

Computer Software
Metabolic Process, Cellular
Severe Acute Respiratory Syndrome
Study
Genome
Sequence Determinations, RNA
Reconstructive Surgical Procedures
Chimera Organism
Gene Expression
Organism
2
29
Paper Details
References
  • References
  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations
  • quote and clock

    No citations available

    This paper may not have been cited yet.

Similar Papers Found In These Feeds

Viral Hemorrhagic Fevers

Viral Hemorrhagic Fevers caused by ebola, marburg and lassa viruses often manifest as multiple organ dysfunction and hemorrhagic shock with high mortality. Discover the latest research on Viral Hemorrhagic Fevers here.

Severe Acute Respiratory Syndrome

Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the SARS coronavirus (SARS-CoV). Initial symptoms are flu-like and may include fever, muscle pain, lethargy symptoms, cough, sore throat, and other nonspecific symptoms. SARS may eventually lead to shortness of breath and pneumonia; either direct viral pneumonia or secondary bacterial pneumonia. DIscover the latest research on SARS here.

© 2020 Meta ULC. All rights reserved

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow

BMC Bioinformatics

Aug 2, 2018

Igor SaggeseFlavio Mignone

PMID: 30066630

DOI: 10.1186/s12859-018-2174-6

Abstract

De novo assembly of RNA-seq data allows the study of transcriptome in absence of a reference genome either if data is obtained from a single organism or from a mixed sample as in metatranscriptomics studies. Given the high number of sequences obtained from NGS approaches, a critical ste...read more

Mentioned in this Paper

Computer Software
Metabolic Process, Cellular
Severe Acute Respiratory Syndrome
Study
Genome
Sequence Determinations, RNA
Reconstructive Surgical Procedures
Chimera Organism
Gene Expression
Organism
2
29

Similar Papers Found In These Feeds

Viral Hemorrhagic Fevers

Viral Hemorrhagic Fevers caused by ebola, marburg and lassa viruses often manifest as multiple organ dysfunction and hemorrhagic shock with high mortality. Discover the latest research on Viral Hemorrhagic Fevers here.

Severe Acute Respiratory Syndrome

Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the SARS coronavirus (SARS-CoV). Initial symptoms are flu-like and may include fever, muscle pain, lethargy symptoms, cough, sore throat, and other nonspecific symptoms. SARS may eventually lead to shortness of breath and pneumonia; either direct viral pneumonia or secondary bacterial pneumonia. DIscover the latest research on SARS here.

Related Papers

Bioinformatics

Identification of novel transcripts in annotated genomes using RNA-Seq

BioinformaticsJune 24, 2011
Adam RobertsLior Pachter
Paper Details
References
  • References
  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations
  • quote and clock

    No citations available

    This paper may not have been cited yet.
/papers/stable-a-novel-approach-to-de-novo-assembly-of/30066630