Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China

The Journal of Antibiotics
Binglin ZhangPaul Dyson

Abstract

A novel actinobacterial strain, designated S10T, was isolated from a sand sample collected from the Qaidam Basin in Qinghai province, China. The strain S10T exhibited antibacterial activity against MRSA. The taxonomic position of the strain S10T was determined by a polyphasic approach. There were six copies of 16S rDNA in S10T which were not same exactly (MH257693-MH257698). Phylogenetic analysis of 16S rRNA gene sequences indicated the strain belonging to the genus Streptomyces and it showed high sequence similarities with Streptomyces chartreusis NBRC 12753T (99.31%), Streptomyces phaeoluteigriseus DSM 41896T (99.24%), Streptomyces variegatus NRRL B-16380T (99.17%) and Streptomyces flavovariabilis NRRL B-16367T (99.17%) comparing with MH257693, MH257695, MH257696, MH257697, and MH257698. Similarities with Streptomyces kunmingensis NBRC14463T (98.82%), Streptomyces bungoensis DSM 41781T(98.76%), S. chartreusis NBRC 12753T (98.69%) and S. phaeoluteigriseus DSM 41896T (98.62%) with MH257694. Whole-genome average nucleotide identity (ANI) values between strain S10T and S. chartreusis NBRC 12753T, S. phaeoluteigriseus DSM 41896T, S. variegatus NRRL B-16380T, S. flavovariabilis NRRL B-16367T, S. kunmingensis NBRC 14463T, S. bungoen...Continue Reading

References

Jun 1, 1977·Journal of General Microbiology·M D CollinsD E Minnikin
Jul 1, 1981·Annals of Human Genetics·S PoveyJ Zeuthen
Jan 1, 1981·Journal of Molecular Evolution·J Felsenstein
Feb 5, 2000·Molecular & General Genetics : MGG·D JakimowiczJ Zakrzewska-Czerwinska
Jun 20, 2001·International Journal of Systematic and Evolutionary Microbiology·A S Anderson, E M Wellington
May 29, 2002·Proceedings of the National Academy of Sciences of the United States of America·Mark C EnrightBrian G Spratt
Oct 1, 1943·Journal of Bacteriology·S A Waksman, A T Henrici
Jan 16, 2007·International Journal of Systematic and Evolutionary Microbiology·Johan GorisJames M Tiedje
Jun 29, 2010·Antonie van Leeuwenhoek·Michael Goodfellow, Hans-Peter Fiedler
Dec 24, 2010·Annals of the New York Academy of Sciences·Selman A WaksmanDonald M Reynolds
Mar 6, 2012·International Journal of Systematic and Evolutionary Microbiology·Jie LiWen-Jun Li
Apr 19, 2012·The Journal of Antibiotics·János Bérdy
Aug 15, 2013·Nature Communications·Nicola SegataCurtis Huttenhower
Feb 8, 2014·International Journal of Systematic and Evolutionary Microbiology·Mincheol KimJongsik Chun
Jul 18, 2014·International Journal of Systematic and Evolutionary Microbiology·Fatemeh MohammadipanahHans-Peter Klenk
Jul 1, 1985·Evolution; International Journal of Organic Evolution·Joseph Felsenstein

❮ Previous
Next ❯

Citations

Jun 25, 2019·International Journal of Systematic and Evolutionary Microbiology·Binglin ZhangPaul Dyson
Apr 8, 2020·BioMed Research International·Hefa Mangzira KemungBey-Hing Goh
Jun 21, 2020·International Journal of Systematic and Evolutionary Microbiology·Binglin ZhangGuangxiu Liu
Oct 30, 2020·International Journal of Systematic and Evolutionary Microbiology·Juan LiGaosen Zhang
Dec 4, 2020·International Journal of Systematic and Evolutionary Microbiology·Gaosen ZhangGuangxiu Liu
Feb 5, 2021·Natural Product Research·Gui-Yun WuHai-Bo Tan
Mar 20, 2021·Journal of Industrial Microbiology & Biotechnology·Richard H Baltz

❮ Previous
Next ❯

Datasets Mentioned

BETA
CP015098.1

Methods Mentioned

BETA
light
scanning electron microscopy
Illumina sequencing

Software Mentioned

FastTree MP
Cipres Science Gateway Server
Phylophlan
MEGA5
EzTaxon

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.