Structural and functional analysis of rice genome

Journal of Genetics
Akhilesh K TyagiSulabha Sharma

Abstract

Rice is an excellent system for plant genomics as it represents a modest size genome of 430 Mb. It feeds more than half the population of the world. Draft sequences of the rice genome, derived by whole-genome shotgun approach at relatively low coverage (4-6 X), were published and the International Rice Genome Sequencing Project (IRGSP) declared high quality (>10 X), genetically anchored, phase 2 level sequence in 2002. In addition, phase 3 level finished sequence of chromosomes 1, 4 and 10 (out of 12 chromosomes of rice) has already been reported by scientists from IRGSP consortium. Various estimates of genes in rice place the number at >50,000. Already, over 28,000 full-length cDNAs have been sequenced, most of which map to genetically anchored genome sequence. Such information is very useful in revealing novel features of macro- and micro-level synteny of rice genome with other cereals. Microarray analysis is unraveling the identity of rice genes expressing in temporal and spatial manner and should help target candidate genes useful for improving traits of agronomic importance. Simultaneously, functional analysis of rice genome has been initiated by marker-based characterization of useful genes and employing functional knock-...Continue Reading

References

Sep 15, 1992·Proceedings of the National Academy of Sciences of the United States of America·H ShizuyaM Simon
Jul 1, 1991·Molecular & General Genetics : MGG·T IzawaK Shimamoto
Feb 11, 1991·Nucleic Acids Research·N MuraiA Hayashimoto
Oct 20, 1995·Science·V E VelculescuK W Kinzler
Jul 1, 1995·Current Biology : CB·G MooreM D Gale
Jan 1, 1994·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·I AshikawaY Minobe
Jan 1, 1994·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·L MonnaY Minobe
Jan 1, 1994·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·S FukuokaY Minobe
May 9, 1995·Proceedings of the National Academy of Sciences of the United States of America·J JiangD C Ward
Jun 1, 1994·The Plant Journal : for Cell and Molecular Biology·K SugimotoH Hirochika
Apr 1, 1996·The Plant Cell·H HirochikaS Takeda
Jun 11, 1996·Proceedings of the National Academy of Sciences of the United States of America·K SinghG S Khush
Dec 1, 1995·Genome Génome / Conseil National De Recherches Canada·J WuY Minobe
Aug 6, 1996·Proceedings of the National Academy of Sciences of the United States of America·T E BureauS R Wessler
Dec 1, 1996·Nucleic Acids Research·J KleffeV Brendel
Jan 1, 1997·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·H H HengP B Moens
Jan 21, 1997·Proceedings of the National Academy of Sciences of the United States of America·M Q Zhang
Oct 31, 1996·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Z X WangT Sasaki
Oct 31, 1996·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·S SajiT Sasaki
Dec 31, 1996·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·B A AntonioT Sasaki
Dec 31, 1996·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·T ShimokawaT Sasaki
Apr 1, 1997·Trends in Genetics : TIG·R Azpiroz-Leehan, K A Feldmann
Apr 25, 1997·Journal of Molecular Biology·C Burge, S Karlin
May 29, 1997·Nature·H W MewesA Zollner
Feb 28, 1997·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·K KoikeT Sasaki
Apr 28, 1997·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Y UmeharaT Sasaki
Apr 28, 1997·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·H TanoueT Sasaki
Feb 12, 1998·Science·P Hieter, M Boguski
Feb 4, 1998·Trends in Genetics : TIG·M A MarraR H Waterston
Mar 21, 1998·Proceedings of the National Academy of Sciences of the United States of America·S YoshimuraT Sasaki
Mar 21, 1998·Proceedings of the National Academy of Sciences of the United States of America·M D Gale, K M Devos
Mar 21, 1998·Proceedings of the National Academy of Sciences of the United States of America·T Sasaki
May 16, 1998·Genome Research·D GordonP Green

❮ Previous
Next ❯

Citations

Jul 10, 2009·Genetica·Tereza Cristina de Oliveira BorbaClaudio Brondani
Jun 6, 2008·International Journal of Plant Genomics·Bert C Y CollardDavid J Mackill
May 11, 2016·Journal of Food Science and Technology·Shruti PandeyJayadep A
Jun 2, 2012·TheScientificWorldJournal·M SohrabiM A Latif
Nov 30, 2006·Plant Biotechnology Journal·Shavindra Bajaj, Amitabh Mohanty
Jun 11, 2005·International Archives of Allergy and Immunology·Richard E GoodmanRonald van Ree
Mar 21, 2006·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·Shubha VijAkhilesh K Tyagi
Apr 14, 2007·Plant Biotechnology Journal·Shubha Vij, Akhilesh K Tyagi
Nov 1, 2005·Expert Review of Clinical Immunology·Richard E Goodman, Sue L Hefle
Feb 11, 2005·Plant & Cell Physiology·Makoto Matsuoka

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

The EMBO Journal
Ludwig Eichinger, Angelika A Noegel
Plant Science : an International Journal of Experimental Plant Biology
J -S. Jeon, Gynheung An
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Tae-Jin YangRod A Wing
© 2022 Meta ULC. All rights reserved