Structural divergence of plant TCTPs

Frontiers in Plant Science
Diego F Gutiérrez-GaleanoRoberto Ruiz-Medrano

Abstract

The Translationally Controlled Tumor Protein (TCTP) is a highly conserved protein at the level of sequence, considered to play an essential role in the regulation of growth and development in eukaryotes. However, this function has been inferred from studies in a few model systems, such as mice and mammalian cell lines, Drosophila and Arabidopsis. Thus, the knowledge regarding this protein is far from complete. In the present study bioinformatic analysis showed the presence of one or more TCTP genes per genome in plants with highly conserved signatures and subtle variations at the level of primary structure but with more noticeable differences at the level of predicted three-dimensional structures. These structures show differences in the "pocket" region close to the center of the protein and in its flexible loop domain. In fact, all predictive TCTP structures can be divided into two groups: (1) AtTCTP1-like and (2) CmTCTP-like, based on the predicted structures of an Arabidopsis TCTP and a Cucurbita maxima TCTP; according to this classification we propose that their probable function in plants may be inferred in principle. Thus, different TCTP genes in a single organism may have different functions; additionally, in those speci...Continue Reading

References

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Datasets Mentioned

BETA
EF091818
AB007759
DQ304537

Methods Mentioned

BETA
GTPases

Software Mentioned

BLASTP
Pdviewer
ALIGNACE
Swiss Model
BLAST
MEGA
WEBLOGO
ProtTest
Molecular Evolutionary Genetics Analysis Program ( MEGA )
MEME

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