Structural variation in the sequencing era.

Nature Reviews. Genetics
Steve S HoRyan E Mills

Abstract

Identifying structural variation (SV) is essential for genome interpretation but has been historically difficult due to limitations inherent to available genome technologies. Detection methods that use ensemble algorithms and emerging sequencing technologies have enabled the discovery of thousands of SVs, uncovering information about their ubiquity, relationship to disease and possible effects on biological mechanisms. Given the variability in SV type and size, along with unique detection biases of emerging genomic platforms, multiplatform discovery is necessary to resolve the full spectrum of variation. Here, we review modern approaches for investigating SVs and proffer that, moving forwards, studies integrating biological information with detection will be necessary to comprehensively understand the impact of SV in the human genome.

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Methods Mentioned

BETA
chromosomal aberrations
PCR
genotyping
Strand-seq
pooled-clone
Hi-C
immunoprecipitation
RNA-seq

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