Succession in the petroleum reservoir microbiome through an oil field production lifecycle

The ISME Journal
Adrien VigneronNicolas Tsesmetzis

Abstract

Subsurface petroleum reservoirs are an important component of the deep biosphere where indigenous microorganisms live under extreme conditions and in isolation from the Earth's surface for millions of years. However, unlike the bulk of the deep biosphere, the petroleum reservoir deep biosphere is subject to extreme anthropogenic perturbation, with the introduction of new electron acceptors, donors and exogenous microbes during oil exploration and production. Despite the fundamental and practical significance of this perturbation, there has never been a systematic evaluation of the ecological changes that occur over the production lifetime of an active offshore petroleum production system. Analysis of the entire Halfdan oil field in the North Sea (32 producing wells in production for 1-15 years) using quantitative PCR, multigenic sequencing, comparative metagenomic and genomic bins reconstruction revealed systematic shifts in microbial community composition and metabolic potential, as well as changing ecological strategies in response to anthropogenic perturbation of the oil field ecosystem, related to length of time in production. The microbial communities were initially dominated by slow growing anaerobes such as members of th...Continue Reading

References

Apr 18, 2000·Antonie van Leeuwenhoek·M MagotB K Patel
Oct 12, 2001·International Journal of Systematic and Evolutionary Microbiology·Y TakahataT Maruyama
Jun 17, 2003·International Journal of Systematic and Evolutionary Microbiology·Ken TakaiKoki Horikoshi
Dec 1, 1982·Applied and Environmental Microbiology·R S Oremland, S Polcin
May 1, 1996·Applied and Environmental Microbiology·R K NilsenT Torsvik
Jul 11, 2006·International Journal of Systematic and Evolutionary Microbiology·Håkon Dahle, Nils-Kåre Birkeland
May 1, 2007·Applied and Environmental Microbiology·Patricia J WaldronKlaus Nüslein
Oct 13, 2007·Nucleic Acids Research·Victor M MarkowitzNikos C Kyrpides
Jun 6, 2008·Current Opinion in Biotechnology·Sara E Blumer-SchuetteRobert M Kelly
May 12, 2009·Applied Microbiology and Biotechnology·Kristine LysnesEgil Sunde
Jun 9, 2009·International Journal of Systematic and Evolutionary Microbiology·G B SlobodkinaA I Slobodkin
Nov 20, 2009·Environmental Science & Technology·Kathleen E DuncanJoseph M Suflita
Dec 17, 2009·Environmental Science & Technology·Gerrit VoordouwJoseph J Arensdorf
Apr 13, 2010·Nature Methods·J Gregory CaporasoRob Knight
May 28, 2010·Environmental Science & Technology·Amy V CallaghanBoris Wawrik
Jul 7, 2010·Environmental Microbiology·Lisa M GiegJoseph M Suflita
Aug 17, 2010·Bioinformatics·Robert C Edgar
Nov 30, 2012·Nucleic Acids Research·Christian QuastFrank Oliver Glöckner
Mar 29, 2013·Nature·Karen G LloydBo Barker Jørgensen
Jun 14, 2013·Nature·William D OrsiJennifer F Biddle
Oct 25, 2014·The ISME Journal·Albert Leopold MüllerAlexander Loy
Jul 26, 2015·Annual Review of Marine Science·Bo Barker Jørgensen, Ian P G Marshall
May 22, 2016·Applied and Environmental Microbiology·Tekle Tafese FidaGerrit Voordouw

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Citations

Apr 4, 2018·BMC Microbiology·Andrea BagiDaniela Maria Pampanin
Feb 10, 2018·Applied Microbiology and Biotechnology·Adrien VigneronNicolas Tsesmetzis
May 31, 2020·Biotechnology Letters·Artur CapãoLuciano Procópio
Sep 18, 2020·Microbial Biotechnology·Jaspreet Mand, Dennis Enning
Jun 16, 2018·FEMS Microbiology Ecology·Giuseppe MerlinoDaniele Daffonchio
May 18, 2020·Scientific Reports·Glenn D ChristmanJennifer F Biddle
Jan 10, 2018·Frontiers in Microbiology·Jan Dolfing, Casey R J Hubert
Aug 21, 2020·Applied Microbiology and Biotechnology·Angeliki MarietouHans Røy
May 19, 2019·Scientific Reports·Moein Jahanbani Veshareh, Hamidreza M Nick
Aug 6, 2019·Frontiers in Microbiology·Adrien VigneronWarwick F Vincent
Oct 13, 2020·Frontiers in Microbiology·Glenn D ChristmanJennifer F Biddle
Nov 3, 2020·Frontiers in Microbiology·Antonios MichasMichael Schloter
Dec 7, 2018·New Biotechnology·Mark PannekensRainer U Meckenstock
Jan 27, 2021·Environmental Science and Pollution Research International·Luciano Procópio
Jun 6, 2021·FEMS Microbiology Letters·Moein Jahanbani Veshareh, Hamidreza M Nick
Aug 25, 2021·Chemosphere·Lucélia CabralLara Durães Sette
Feb 15, 2019·The Science of the Total Environment·Xiaotong WangYanming Zhang
Dec 6, 2021·FEMS Microbiology Ecology·Lisa VoskuhlVerena S Brauer

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Datasets Mentioned

BETA
PRJNA348365
3300005086

Methods Mentioned

BETA
chip
PCR
amplicon sequencing

Software Mentioned

SIMPER
QIIME
CANOCO
MetaCyc
Vegan
MEGAHIT
CANODRAW
IMG
IDBA
ade4TKgui

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