Abstract
Routine molecular diagnostic testing by our laboratory, based on using a primer pair with conservative binding sites on the spike glycoprotein coding sequence, has indicated the recurring of a unique phylogenetic cluster of chicken infectious bronchitis viruses (IBV) in the Middle East since 2010. The nearly full-length S1 subunit of the spike gene phylogeny of selected strains, however, split up this grouping, suggesting potential recombination in the S1 gene. In order to clarify this, various bioinformatic analyses of the strains were carried out, which confirmed this supposition. Two patterns of recombination were found among the strains, one of which could also be identified in GenBank-deposited IBV sequences from the region. These findings demonstrate that IBV strains of different recombinant patterns occur simultaneously in the same geographic region and could circulate for an extended period of time, thus contributing to the knowledge on IBV evolution.
References
Sep 1, 1990·The Journal of General Virology·G KochD J van Roozelaar
Jan 1, 1990·Advances in Experimental Medicine and Biology·D CavanaghD Li
Dec 16, 1998·Journal of Virology·K S LoleS C Ray
Jun 30, 2004·Avian Pathology : Journal of the W.V.P.A·Shengwang Liu, Xiangang Kong
Oct 14, 2005·Molecular Biology and Evolution·Daniel H Huson, David Bryant
Jan 13, 2006·Avian Diseases·Mark W JackwoodStephan Thayer
Aug 29, 2006·Journal of Virological Methods·Scott A CallisonMark W Jackwood
Dec 1, 1996·Avian Pathology : Journal of the W.V.P.A·A AdzharD Cavanagh
Sep 1, 1992·Avian Pathology : Journal of the W.V.P.A·D CavanaghJ K Cook
Apr 1, 2000·Avian Pathology : Journal of the W.V.P.A·J J De Wit
Feb 16, 2010·Vaccine·Hyun Jeong LeeChang Seon Song
Jan 11, 2011·Veterinary Microbiology·Zana H MahmoodAumaid U Uthman
May 7, 2011·Molecular Biology and Evolution·Koichiro TamuraSudhir Kumar
Oct 14, 2011·Viruses·Sharmi W ThorMark W Jackwood
May 23, 2012·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Mark W JackwoodAndreas Handel
Aug 21, 2012·Archives of Virology·Ahmed S Abdel-MoneimMagdy F El-Kady
Apr 7, 2015·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Tingting ZhangShengwang Liu
Aug 1, 2015·Virus Research·Kannan GanapathyAnne Forrester
Feb 18, 2016·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Viviana ValastroIsabella Monne
Dec 1, 1999·Avian Pathology : Journal of the W.V.P.A·I CapuaR E Gough
Mar 26, 2015·Virus Evolution·Santiago F Elena, Oliver G Pybus
Dec 1, 2013·International Journal of Veterinary Science and Medicine·Karim SelimAhmed A El-Sanousi
Citations
Dec 7, 2018·Avian Pathology : Journal of the W.V.P.A·J J Sjaak de WitJane K A Cook
Feb 26, 2020·Veterinary World·Adel M AbdelazizAbdul Aziz Al-Amer
May 6, 2020·Veterinary World·Mustafa AbabnehMohammad Borhan Al-Zghoul
Jan 9, 2021·Archives of Virology·Mohamed H HoutaAhmed S Abdel-Moneim
Dec 23, 2020·Veterinary Sciences·Hassanein H Abozeid, Mahmoud M Naguib
Apr 4, 2021·Viruses·Krisztina BaliKrisztián Bányai