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svviz: a read viewer for validating structural variants

bioRxiv

Mar 7, 2015

Noah SpiesArend Sidow

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Abstract

Visualizing read alignments is the most effective way to validate candidate SVs with existing data. We present svviz, a sequencing read visualizer for structural variants (SVs) that sorts and displays only reads relevant to a candidate SV. svviz works by searching input bam(s) for poten...read more

Mentioned in this Paper

Computer Software
Gene Mutant
Psychological Orientation
Genome
Zygosity
High-Throughput RNA Sequencing
Structure
Size
Short Oligonucleotide Mass Analysis
Nucleic Acid Sequencing
10
5
Paper Details
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  • svviz: a read viewer for validating structural variants

    bioRxiv

    Mar 7, 2015

    Noah SpiesArend Sidow

    PMID: 990016063

    DOI: 10.1101/016063

    Abstract

    Visualizing read alignments is the most effective way to validate candidate SVs with existing data. We present svviz, a sequencing read visualizer for structural variants (SVs) that sorts and displays only reads relevant to a candidate SV. svviz works by searching input bam(s) for poten...read more

    Mentioned in this Paper

    Computer Software
    Gene Mutant
    Psychological Orientation
    Genome
    Zygosity
    10
    5
    Paper Details
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