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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

PloS One

Dec 31, 2015

Matija KorparMile Sikic

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Abstract

In recent years we have witnessed a growth in sequencing yield, the number of samples sequenced, and as a result-the growth of publicly maintained sequence databases. The increase of data present all around has put high requirements on protein similarity search algorithms with two ever-...read more

Mentioned in this Paper

Computer Programs and Programming
Software Tools
Determination, Sequence Homology
Local
Swiss
Heuristics
GenBank
Computational Molecular Biology
Question (Inquiry)
Sequencing
3
10
Paper Details
References
  • References13
  • Citations3
12

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

PloS One

Dec 31, 2015

Matija KorparMile Sikic

PMID: 26719890

DOI: 10.1371/journal.pone.0145857

Abstract

In recent years we have witnessed a growth in sequencing yield, the number of samples sequenced, and as a result-the growth of publicly maintained sequence databases. The increase of data present all around has put high requirements on protein similarity search algorithms with two ever-...read more

Mentioned in this Paper

Computer Programs and Programming
Software Tools
Determination, Sequence Homology
Local
Swiss
3
10
Paper Details
References
  • References13
  • Citations3
12

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