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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

PloS One

Jan 1, 2016

Matija KorparMile Šikic

Abstract

In recent years we have witnessed a growth in sequencing yield, the number of samples sequenced, and as a result-the growth of publicly maintained sequence databases. The increase of data present all around has put high requirements on protein similarity search algorithms with two ever-...read more

Mentioned in this Paper

Heuristics
Question (Inquiry)
Basic Local Alignment Search Tool
Computer Programs and Programming
Sequencing
SLC6A7
Local
GenBank
Swiss
Computational Molecular Biology
3
11
Paper Details
References
  • References14
  • Citations4
12
  • References14
  • Citations4
1

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SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

PloS One

Jan 1, 2016

Matija KorparMile Šikic

PMID: 26719890

DOI: 10.1371/journal.pone.0145857

Abstract

In recent years we have witnessed a growth in sequencing yield, the number of samples sequenced, and as a result-the growth of publicly maintained sequence databases. The increase of data present all around has put high requirements on protein similarity search algorithms with two ever-...read more

Mentioned in this Paper

Heuristics
Question (Inquiry)
Basic Local Alignment Search Tool
Computer Programs and Programming
Sequencing
SLC6A7
Local
GenBank
Swiss
Computational Molecular Biology
3
11

Similar Papers Found In These Feeds

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

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Bioinformatics

SSMAL: similarity searching with alignment graphs

BioinformaticsAugust 8, 1998
P Nicodème
Paper Details
References
  • References14
  • Citations4
12
  • References14
  • Citations4
1
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