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SW#db: GPU-accelerated exact sequence similarity database search

bioRxiv

Jan 14, 2015

Matija KorparMile Sikic

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Abstract

The deluge of next-generation sequencing (NGS) data and expanding database poses higher requirements for protein similarity search. State-of-the-art tools such as BLAST are not fast enough to cope with these requirements. Because of that it is necessary to create new algorithms that wil...read more

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Software Tools
Question (Inquiry)
Swiss
Massively-Parallel Sequencing
Basic Local Alignment Search Tool
5
2
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  • SW#db: GPU-accelerated exact sequence similarity database search

    bioRxiv

    Jan 14, 2015

    Matija KorparMile Sikic

    PMID: 990013805

    DOI: 10.1101/013805

    Abstract

    The deluge of next-generation sequencing (NGS) data and expanding database poses higher requirements for protein similarity search. State-of-the-art tools such as BLAST are not fast enough to cope with these requirements. Because of that it is necessary to create new algorithms that wil...read more

    Mentioned in this Paper

    Software Tools
    Question (Inquiry)
    Swiss
    Massively-Parallel Sequencing
    Basic Local Alignment Search Tool
    5
    2
    Paper Details
    References
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