Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Scientific Data
Mark V BrownLevente Bodrossy

Abstract

Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryot...Continue Reading

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Citations

Apr 12, 2020·Molecular Ecology Resources·Linda ArmbrechtAlan Cooper
Aug 17, 2020·Communications Biology·Pedro R FradeDavid G Bourne
Jan 31, 2019·Frontiers in Microbiology·Laurence J ClarkeBruce E Deagle
Jun 23, 2019·Microbiome·Bettina GlaslNicole S Webster
Dec 11, 2020·Molecular Ecology·Laurence J ClarkeBruce E Deagle
Feb 17, 2021·BMC Ecology and Evolution·Tahnee ManningAidyn Mouradov
Jul 4, 2019·Environmental Science & Technology·Jian-Xin XuYong-Guan Zhu

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Methods Mentioned

BETA
flow cytometry
profilers
amplicon sequencing

Software Mentioned

Integrated Marine Observing System ( IMOS )
IMOS
MOTHUR
usearch

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