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T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

Nucleic Acids Research

Dec 24, 2010

Anna-Sophie Fiston-LavierJosefa González

Abstract

Transposable elements (TEs) are repetitive DNA sequences that are ubiquitous, extremely abundant and dynamic components of practically all genomes. Much effort has gone into annotation of TE copies in reference genomes. The sequencing cost reduction and the newly available next-generati...read more

Mentioned in this Paper

Genome
No Data re: Ingredient
Computer Programs and Programming
Genomics
Sequencing
Massively-Parallel Sequencing
Sequence Determinations, DNA
High-Throughput Nucleotide Sequencing
Drosophila melanogaster
DNA Transposable Elements
Paper Details
References
  • References31
  • Citations30
1234
  • References31
  • Citations30
123

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T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

Nucleic Acids Research

Dec 24, 2010

Anna-Sophie Fiston-LavierJosefa González

PMID: 21177644

DOI: 10.1093/nar/gkq1291

Abstract

Transposable elements (TEs) are repetitive DNA sequences that are ubiquitous, extremely abundant and dynamic components of practically all genomes. Much effort has gone into annotation of TE copies in reference genomes. The sequencing cost reduction and the newly available next-generati...read more

Mentioned in this Paper

Genome
No Data re: Ingredient
Computer Programs and Programming
Genomics
Sequencing
Massively-Parallel Sequencing
Sequence Determinations, DNA
High-Throughput Nucleotide Sequencing
Drosophila melanogaster
DNA Transposable Elements

Similar Papers Found In These Feeds

Transposons for Gene Editing

Transposons can replicate and spread through the host’s genome and therefore be used as a genetic tool for analysis of gene function. Discover the latest research on the use of transposons for gene editing here.

Non-coding Variants in Cancer

Mutations, single nucleotide variants and large genomic rearrangements, in non-coding regions of the genome can have severe consequences such as disruption of transcription factor binding sites and functions of non-coding RNAs and can impact tumor development and progression. Here is the latest research.

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Paper Details
References
  • References31
  • Citations30
1234
  • References31
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123
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