Template-O-Matic: a toolbox for creating customized pediatric templates.

NeuroImage
Marko WilkeChristian Gaser

Abstract

Processing pediatric neuroimaging data is a challenge due to pervasive morphological changes that occur in the human brain during normal development. This is of special relevance when reference data is used as part of the processing approach, as in spatial normalization and tissue segmentation. Current approaches construct reference data (templates) by averaging brain images from a control group of subjects, or by creating custom templates from the group under study. In this technical note, we describe a new, and generalized method of constructing such appropriate reference data by statistically analyzing a large sample (n=404) of healthy children, as acquired during the NIH MRI study of normal brain development. After eliminating non-contributing demographic variables, we modeled the effects of age (first, second, and third-order terms) and gender, for each voxel in gray matter and white matter. By appropriate weighting with the parameter estimates from these analyses, complete tissue maps can be generated automatically from this database to match a pediatric population selected for study. The algorithm is implemented in the form of a toolbox for the SPM5 image data processing suite, which we term Template-O-Matic. We compare ...Continue Reading

References

Dec 1, 1994·Child Development·R M Hauser
Oct 1, 1996·Brain : a Journal of Neurology·A L ReissM B Denckla
Dec 1, 1996·NeuroImage·K AmuntsK Zilles
Jul 1, 1999·NeuroImage·K J FristonK J Worsley
Jul 17, 1999·Human Brain Mapping·J Ashburner, K J Friston
Jun 22, 2000·NeuroImage·J Ashburner, K J Friston
Sep 8, 2001·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·J MazziottaB Mazoyer
Aug 31, 2002·Human Brain Mapping·Marko WilkeScott K Holland
Oct 9, 2002·JAMA : the Journal of the American Medical Association·F Xavier CastellanosJudith L Rapoport
Feb 21, 2003·Journal of Child Neurology·Anna Weber ByarsElena Plante
Oct 3, 2003·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·M WilkeS K Holland
May 19, 2004·Proceedings of the National Academy of Sciences of the United States of America·Nitin GogtayPaul M Thompson
Aug 25, 2004·NeuroImage·Richard J HaierMichael T Alkire
Apr 14, 2005·Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology·Marco R HoeksmaHerman van Engeland
May 24, 2005·NeuroImage·Derek K JonesRobert J Howard
Jun 15, 2005·Journal of Korean Medical Science·Jae Sung LeeMyung Chul Lee
Jun 16, 2005·NeuroImage·John Ashburner, Karl J Friston
Oct 4, 2005·NeuroImage·Pierre-Yves HervéNathalie Tzourio-Mazoyer
Dec 15, 2005·IEEE Transactions on Medical Imaging·Meritxell Bach CuadraJean-Philippe Thiran
Dec 27, 2005·NeuroImage·Alan C Evans, UNKNOWN Brain Development Cooperative Group
Mar 4, 2006·NeuroImage·Roberto ColomRichard J Haier
Mar 30, 2006·Brain : a Journal of Neurology·Linda E CampbellKieran C Murphy
Jun 16, 2006·Neurobiology of Aging·Charles D SmithWilliam R Markesbery
Oct 20, 2006·Experimental Brain Research·Marko WilkeScott K Holland
Dec 15, 2006·NeuroImage·Katherine L NarrArthur W Toga
Jan 24, 2007·NeuroImage·Bertrand ThirionJean-Baptiste Poline
Jan 24, 2007·NeuroImage·C R AlmliUNKNOWN Brain Development Cooperative Group
May 22, 2007·Journal of the International Neuropsychological Society : JINS·Deborah P WaberUNKNOWN Brain Development Cooperative Group
Jun 15, 2007·Child and Adolescent Psychiatric Clinics of North America·Marie Schaer, Stephan Eliez
Sep 1, 2007·NeuroImage·John Ashburner

❮ Previous
Next ❯

Citations

May 30, 2013·Clinical Neuroradiology·Yuzhen ZhangYuhua Li
May 14, 2010·Pediatric Radiology·Loukas G Astrakas, Maria I Argyropoulou
Jan 23, 2013·Journal of Neural Transmission·Viola KappelAnne Beck
May 7, 2011·Brain Topography·Elizabeth W Pang
Sep 4, 2010·Brain Imaging and Behavior·Shelli R KeslerDella Koovakkattu
Apr 29, 2010·Current Neurology and Neuroscience Reports·Emily R Freilich, William D Gaillard
Oct 6, 2010·Proceedings of the National Academy of Sciences of the United States of America·Brandon A ZielinskiWilliam W Seeley
Jul 18, 2012·Developmental Neuropsychology·Carmen E SanchezC Robert Almli
May 21, 2013·Developmental Neuropsychology·Megan Spencer-SmithRegula Everts
Apr 12, 2013·Brain : a Journal of Neurology·Karen A GordonBlake C Papsin
Oct 9, 2009·Alzheimer Disease and Associated Disorders·Robyn A HoneaJeffrey M Burns
May 29, 2012·BMC Neurology·S M Hadi HosseiniShelli R Kesler
May 17, 2011·PloS One·Jamie L HansonSeth D Pollak
Jul 14, 2012·PloS One·Tamara HersheyUNKNOWN Washington University Wolfram Study Group
Nov 28, 2012·PloS One·Brandon A ZielinskiJanet E Lainhart
Jan 13, 2012·The Journal of Neuroscience : the Official Journal of the Society for Neuroscience·Michael V LombardoSimon Baron-Cohen
Aug 20, 2010·The Journal of Neuroscience : the Official Journal of the Society for Neuroscience·Eileen LudersArthur W Toga
Dec 4, 2013·International Journal of Developmental Neuroscience : the Official Journal of the International Society for Developmental Neuroscience·Kenichi OishiSusumu Mori
Sep 8, 2012·Epilepsy Research and Treatment·Sandrine de RibaupierreSusan Hayman-Abello
Sep 12, 2013·Brain : a Journal of Neurology·Gerald PahsTorsten Baldeweg
Jun 19, 2013·Brain Structure & Function·Katarzyna JednorógAnna Grabowska
Oct 22, 2014·Translational Psychiatry·R HashimotoN Ozaki
Dec 3, 2014·Neuroimaging Clinics of North America·Lucie Hertz-PannierCatherine Chiron
Dec 29, 2009·AJNR. American Journal of Neuroradiology·S M D HenleyUNKNOWN EHDN Imaging Working Group
Jan 5, 2011·Journal of Developmental and Behavioral Pediatrics : JDBP·Timothy J Silk, Amanda G Wood
Mar 2, 2016·Journal of Psychiatric Research·Anna LorenzenAlexander Prehn-Kristensen
Feb 24, 2016·Developmental Cognitive Neuroscience·Tracy RigginsElizabeth Redcay
Jan 9, 2016·Journal of Neuroscience Methods·Priya Lakshmi NarayananErnesta M Meintjes
Jan 26, 2016·Autism Research : Official Journal of the International Society for Autism Research·Ryuzo HanaieMasako Taniike
Jun 25, 2013·The Journal of Pain : Official Journal of the American Pain Society·Jing XiangAndrew D Hershey
Apr 23, 2013·Biological Psychiatry·Manpreet K SinghIan H Gotlib
Oct 30, 2015·Human Brain Mapping·Mickael DinomaisUNKNOWN AVCnn Study Group
Jan 16, 2016·European Child & Adolescent Psychiatry·Lindsay C HanfordRoberto B Sassi
Sep 8, 2015·Developmental Cognitive Neuroscience·Wanze XieQiyong Gong
Sep 19, 2015·Neuroinformatics·Wai Yen LohDeanne K Thompson

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