Testing reported associations of genetic risk factors for oral clefts in a large Irish study population.

Birth Defects Research. Part A, Clinical and Molecular Teratology
Tonia C CarterJames L Mills

Abstract

Suggestive, but not conclusive, studies implicate many genetic variants in oral cleft etiology. We used a large, ethnically homogenous study population to test whether reported associations between nonsyndromic oral clefts and 12 genes (CLPTM1, CRISPLD2, FGFR2, GABRB3, GLI2, IRF6, PTCH1, RARA, RYK, SATB2, SUMO1, TGFA) could be confirmed. Thirty-one single nucleotide polymorphisms (SNPs) in exons, splice sites, and conserved non-coding regions were studied in 509 patients with cleft lip with or without cleft palate (CLP), 383 with cleft palate only (CP), 838 mothers and 719 fathers of patients with oral clefts, and 902 controls from Ireland. Case-control and family-based statistical tests were performed using isolated oral clefts for the main analyses. In case-control comparisons, the minor allele of PTCH1 A562A (rs2066836) was associated with reduced odds of CLP (odds ratios [OR], 0.29; 95% confidence interval [CI], 0.13-0.64 for homozygotes), whereas the minor allele of PTCH1 L1315P (rs357564) was associated with increased odds of CLP (OR, 1.36; 95% CI, 1.07-1.74 for heterozygotes; and OR, 1.56; 95% CI, 1.09-2.24 for homozygotes). The minor allele of one SUMO1 SNP, rs3769817 located in intron 2, was associated with increased o...Continue Reading

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Citations

Nov 27, 2010·Annals of Human Genetics·James F Troendle, James L Mills
Jun 19, 2012·Annual Review of Genomics and Human Genetics·Mary L Marazita
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Mar 28, 2012·The Cleft Palate-craniofacial Journal : Official Publication of the American Cleft Palate-Craniofacial Association·Jane PeredoKatrina M Dipple
Oct 19, 2013·The Cleft Palate-craniofacial Journal : Official Publication of the American Cleft Palate-Craniofacial Association·Robert McDonnellLaura Duggan
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Mar 30, 2019·Molecular Genetics & Genomic Medicine·Nurul Syazana Mohamad ShahAhmad Sukari Halim
Aug 12, 2016·Birth Defects Research. Part A, Clinical and Molecular Teratology·Kachin WattanawongAmmarin Thakkinstian
Nov 17, 2020·Frontiers in Cell and Developmental Biology·Marcella MartinelliLuca Scapoli

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