The complete chloroplast genome of Abeliophyllum distichum f. lilacinum Nakai (Oleaceae) from the Chungbuk Province, Korea.

Mitochondrial DNA. Part B, Resources
Jongsun ParkJae Ho Park

Abstract

The chloroplast genome of Abeliophyllum distichum f. lilacinum Nakai, classified to a monotypic in this genus, and an endemic species in Korea, was sequenced to understand the genetic differences among intraspecies and cultivars of A. distichum. The chloroplast genome length is 156,015 bp (GC ratio is 37.8%) and has a typical quadripartite structure: 86,779 bp large single copy (35.8%) and 17,828 bp small single copy (31.9%) regions separated by two 25,704 bp inverted repeat (43.2%) regions. The genome encodes for 133 genes (88 protein-coding genes, eight rRNAs, and 37 tRNAs). Six to 99 SNPs and seven to 18 INDEL regions (19 bp to 72 bp) were identified against available chloroplast genomes of A. distichum. Phylogenetic trees show that A. distichum f. lilacinum is clustered with the Dae Ryun cultivar which has a larger fruit body. Our analyses suggest additional research, such as Genotyping-By-Sequencing, for understanding relationship between morphology and genotype of A. distichum.

References

Mar 20, 2008·Genome Research·Daniel R Zerbino, Ewan Birney
Jun 10, 2009·Bioinformatics·Heng LiUNKNOWN 1000 Genome Project Data Processing Subgroup
Feb 24, 2012·Systematic Biology·Fredrik RonquistJohn P Huelsenbeck
Jan 19, 2013·Molecular Biology and Evolution·Kazutaka Katoh, Daron M Standley
May 4, 2018·Molecular Biology and Evolution·Sudhir KumarKoichiro Tamura
Jul 24, 2019·Mitochondrial DNA. Part B, Resources·Sang-Hun OhSangtae Kim
Oct 9, 2019·Mitochondrial DNA. Part B, Resources·Yongsung KimJeong-Ill Jeon

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