The Constitutive Proteome of Human Aqueous Humor and Race Specific Alterations.

Proteomes
Sai Karthik KodeboyinaAshok Sharma

Abstract

Aqueous humor (AH) is the fluid in the anterior and posterior chambers of the eye that contains proteins regulating ocular homeostasis. Analysis of aqueous humor proteome is challenging, mainly due to low sample volume and protein concentration. In this study, by utilizing state of the art technology, we performed Liquid-Chromatography Mass spectrometry (LC-MS/MS) analysis of 88 aqueous humor samples from subjects undergoing cataract surgery. A total of 2263 unique proteins were identified, which were sub-divided into four categories that were based on their detection in the number of samples: High (n = 152), Medium (n = 91), Low (n = 128), and Rare (n = 1892). A total of 243 proteins detected in at least 50% of the samples were considered as the constitutive proteome of human aqueous humor. The biological processes and pathways enriched in the AH proteins mainly include vesicle mediated transport, acute phase response signaling, LXR/RXR activation, complement system, and secretion. The enriched molecular functions are endopeptidase activity, and various binding functions, such as protein binding, lipid binding, and ion binding. Additionally, this study provides a novel insight into race specific differences in the AH proteome....Continue Reading

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Citations

Aug 28, 2021·International Journal of Molecular Sciences·Lucia MundoFederico Galvagni
Oct 5, 2021·Lipids in Health and Disease·Parth A PatelAshok Sharma

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Datasets Mentioned

BETA
PXD022463

Methods Mentioned

BETA
immunodepletion
Fusion Tribrid

Software Mentioned

R
limma
Proteome Discoverer
IPA
R Project for Statistical Computing
SequestHT

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