The European Bioinformatics Institute's data resources.

Nucleic Acids Research
Catherine BrooksbankJanet Thornton

Abstract

The wide uptake of next-generation sequencing and other ultra-high throughput technologies by life scientists with a diverse range of interests, spanning fundamental biological research, medicine, agriculture and environmental science, has led to unprecedented growth in the amount of data generated. It has also put the need for unrestricted access to biological data at the centre of biology. The European Bioinformatics Institute (EMBL-EBI) is unique in Europe and is one of only two organisations worldwide providing access to a comprehensive, integrated set of these collections. Here, we describe how the EMBL-EBI's biomolecular databases are evolving to cope with increasing levels of submission, a growing and diversifying user base, and the demand for new types of data. All of the resources described here can be accessed from the EMBL-EBI website: http://www.ebi.ac.uk.

References

Dec 14, 2004·Nature·UNKNOWN International Chicken Genome Sequencing Consortium
Dec 31, 2005·Nucleic Acids Research·Andrei KouranovHelen M Berman
Dec 5, 2006·Nucleic Acids Research·Helen BermanJohn L Markley
Feb 20, 2007·Genome Biology·Michael Bevan, Robbie Waugh
Aug 10, 2007·Nature Biotechnology·Sandra OrchardHenning Hermjakob
Nov 7, 2007·Nucleic Acids Research·Eldon L UlrichJohn L Markley
Apr 24, 2008·Briefings in Bioinformatics·Daron M StandleyHaruki Nakamura
Oct 23, 2008·Nucleic Acids Research·Sarah HunterCorin Yeats
Oct 23, 2008·Nucleic Acids Research·Tanya BarrettRon Edgar
Nov 5, 2008·Nucleic Acids Research·Lisa MatthewsPeter D'Eustachio
Jan 16, 2009·BMC Genomics·Damian SmedleyArek Kasprzyk
May 14, 2009·Nucleic Acids Research·Hamish McWilliamRodrigo Lopez
Jun 13, 2009·Genome Biology·Detlef Weigel, Richard Mott
Jul 10, 2009·Nature Biotechnology·Harald BarsnesLennart Martens
Sep 29, 2009·Nucleic Acids Research·Phil WilkinsonDamian Smedley
Oct 22, 2009·Nucleic Acids Research·UNKNOWN UniProt Consortium
Oct 24, 2009·Nucleic Acids Research·B ArandaH Hermjakob
Oct 27, 2009·Nucleic Acids Research·Paula de MatosChristoph Steinbeck
Oct 28, 2009·Nucleic Acids Research·S VelankarG J Kleywegt
Nov 4, 2009·Nucleic Acids Research·P J KerseyA Yates
Nov 4, 2009·Nucleic Acids Research·Weizhong LiRodrigo Lopez
Nov 13, 2009·Nucleic Acids Research·Paul FlicekStephen M J Searle
Nov 13, 2009·Nucleic Acids Research·Rasko LeinonenGuy Cochrane
Nov 13, 2009·Nucleic Acids Research·Juan Antonio VizcaínoLennart Martens
Nov 13, 2009·Nucleic Acids Research·Misha KapusheskyAlvis Brazma
Jan 1, 2009·Journal of Cheminformatics·Mark Rijnbeek, Christoph Steinbeck

❮ Previous
Next ❯

Citations

Jan 29, 2010·Cancer Metastasis Reviews·Raj ChariWan L Lam
Sep 13, 2012·Omics : a Journal of Integrative Biology·Elena PonomarenkoAlexander Archakov
Aug 28, 2010·Briefings in Bioinformatics·Jennifer M WilliamsWarren C Lathe
Nov 4, 2010·Nucleic Acids Research·Bas VrolingGert Vriend
May 5, 2010·Nucleic Acids Research·Mickael GoujonRodrigo Lopez
May 15, 2013·Nucleic Acids Research·Hamish McWilliamRodrigo Lopez
Apr 5, 2011·Acta Crystallographica. Section D, Biological Crystallography·Sameer Velankar, Gerard J Kleywegt
Jun 16, 2010·BMC Bioinformatics·Terry DiszRobert A Edwards
May 6, 2010·Genome Biology·Lincoln D Stein
Jul 31, 2010·Genome Biology·Julian ParkhillPaul Kersey
Jun 21, 2013·PLoS Computational Biology·Louisa Wood, Philipp Gebhardt
Aug 7, 2012·International Journal of Nanomedicine·Victor MaojoCasimir Kulikowski
May 2, 2013·Acta Crystallographica. Section D, Biological Crystallography·Aleksandras GutmanasGerard J Kleywegt
Dec 4, 2012·Nucleic Acids Research·Sameer VelankarGerard J Kleywegt
Jun 24, 2011·Journal of Chemical Information and Modeling·John R OwenFabian López-Vallejo
Aug 23, 2011·Food and Chemical Toxicology : an International Journal Published for the British Industrial Biological Research Association·F MaddahU Hammerling
Mar 1, 2012·PloS One·Chongyun ChengZhi-Jie Liu
Oct 18, 2013·Journal of Bioinformatics and Computational Biology·Shuigeng ZhouJihong Guan
May 15, 2020·Nature Protocols·Allegra T AronPieter C Dorrestein
Jan 19, 2012·Journal of Chemical Information and Modeling·Modest von KorffClaire-Lise Ciana

❮ Previous
Next ❯

Methods Mentioned

BETA
X-ray
Nuclear Magnetic

Software Mentioned

Annotation
wwPDB
IntAct
TrEMBL
PRIDE
CiteXplore
HAMAP
Ensembl Bacteria
Ensembl
ArrayExpress

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

© 2022 Meta ULC. All rights reserved