The fecal virome of red-crowned cranes

Archives of Virology
Yan WangEric Delwart

Abstract

The red-crowned crane is one of the rarest crane species, and its population is decreasing due to loss of habitat, poisoning, and infections. Using a viral metagenomics approach, we analyzed the virome of feces from wild and captive red-crowned cranes, which were pooled separately. Vertebrate viruses belonging to the families Picornaviridae, Parvoviridae, Circoviridae, and Caliciviridae were detected. Among the members of the family Picornaviridae, we found three that appear to represent new genera. Six nearly complete genomes from members of the family Parvoviridae were also obtained, including four new members of the proposed genus "Chapparvovirus", and two members of the genus Aveparvovirus. Six small circular DNA genomes were also characterized. One nearly complete genome showing a low level of sequence identity to caliciviruses was also characterized. Numerous viruses believed to infect insects, plants, and crustaceans were also identified, which were probably derived from the diet of red-crowned cranes. This study increases our understanding of the enteric virome of red-crowned cranes and provides a baseline for comparison to those of other birds or following disease outbreaks.

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Citations

Jan 8, 2020·Viruses·Theocharis TsoleridisJonathan K Ball
Jun 26, 2020·Journal of Virology·Wei-Shan ChangEdward C Holmes
Sep 5, 2019·Viruses·Matheus A DuarteFabrício S Campos
Jun 4, 2020·Virologica Sinica·Zhibin ShiJingfei Wang
May 1, 2019·Viruses·Elizabeth FahsbenderEric Delwart
Aug 1, 2021·Archives of Virology·Arvind Varsani, Mart Krupovic
Sep 24, 2021·Veterinary Research Communications·Hasan Abayli, Kezban Can-Sahna

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Datasets Mentioned

BETA
SRR7285959

Methods Mentioned

BETA
PCR

Software Mentioned

BLASTx
Geneious
CLUSTAL W
SOAPdenovo2
MiSeq
MEGA5
BLASTp
Linux
Mfold
VecScreen BLASTn

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