The genome evolution and domestication of tropical fruit mango.

Genome Biology
Peng WangYeyuan Chen

Abstract

Mango is one of the world's most important tropical fruits. It belongs to the family Anacardiaceae, which includes several other economically important species, notably cashew, sumac and pistachio from other genera. Many species in this family produce family-specific urushiols and related phenols, which can induce contact dermatitis. We generate a chromosome-scale genome assembly of mango, providing a reference genome for the Anacardiaceae family. Our results indicate the occurrence of a recent whole-genome duplication (WGD) event in mango. Duplicated genes preferentially retained include photosynthetic, photorespiration, and lipid metabolic genes that may have provided adaptive advantages to sharp historical decreases in atmospheric carbon dioxide and global temperatures. A notable example of an extended gene family is the chalcone synthase (CHS) family of genes, and particular genes in this family show universally higher expression in peels than in flesh, likely for the biosynthesis of urushiols and related phenols. Genome resequencing reveals two distinct groups of mango varieties, with commercial varieties clustered with India germplasms and demonstrating allelic admixture, and indigenous varieties from Southeast Asia in th...Continue Reading

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Citations

Feb 16, 2021·Frontiers in Plant Science·Sariel Hübner, Michael B Kantar
Feb 24, 2021·BMC Plant Biology·UNKNOWN Mango Genome ConsortiumHaidong Yan
Sep 15, 2021·The Plant Journal : for Cell and Molecular Biology·Wenping ZhangRay Ming

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Methods Mentioned

BETA
Hi-C
RNA-Seq
PCA

Software Mentioned

ANNOVAR
Distruct
Stringtie
GATK HaplotypeCaller
Structure Harvester
RepeatMasker
Evolview
minimap2
CLUMPP
VCFtools

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