Abstract
Polaromonas sp. strain JS666 can grow on cis-1,2-dichloroethene (cDCE) as a sole carbon and energy source and may be useful for bioremediation of chlorinated solvent-contaminated sites. Analysis of the genome sequence of JS666 (5.9 Mb) shows a bacterium well adapted to pollution that carries many genes likely to be involved in hydrocarbon and xenobiotic catabolism and metal resistance. Clusters of genes coding for haloalkane, haloalkanoate, n-alkane, alicyclic acid, cyclic alcohol, and aromatic catabolism were analyzed in detail, and growth on acetate, catechol, chloroacetate, cyclohexane carboxylate, cyclohexanol, ferulate, heptane, 3-hydroxybenzoate, hydroxyquinol, gentisate, octane, protocatechuate, and salicylate was confirmed experimentally. Strain JS666 also harbors diverse putative mobile genetic elements, including retrons, inteins, a miniature inverted-repeat transposable element, insertion sequence transposases from 14 families, eight genomic islands, a Mu family bacteriophage, and two large (338- and 360-kb) plasmids. Both plasmids are likely to be self-transferable and carry genes for alkane, alcohol, aromatic, and haloacid metabolism. Overall, the JS666 genome sequence provides insights into the evolution of pollut...Continue Reading
References
Dec 1, 1990·Journal of Bacteriology·R S BurlageF Larimer
Dec 1, 1989·Journal of Bacteriology·D B JanssenB Witholt
Jun 1, 1982·Journal of Bacteriology·H J Ougham, P W Trudgill
Sep 1, 1995·Biodegradation·J van der Ploeg, D B Janssen
Dec 1, 1994·Biodegradation·R C WyndhamM C Peel
Apr 10, 1995·Analytical Biochemistry·B M BartonA J Zuccarelli
Jan 1, 1994·Annual Review of Microbiology·D B JanssenJ R van der Ploeg
Aug 19, 1994·Gene·G A KowalchukL N Ornston
Jul 1, 1996·International Journal of Systematic Bacteriology·R L IrgensJ T Staley
Jan 1, 1996·Annual Review of Microbiology·C S Harwood, R E Parales
Apr 1, 1997·Journal of Bacteriology·H PriefertA Steinbüchel
Mar 28, 1998·The Journal of Biological Chemistry·M J GassonN J Walton
May 16, 1998·Genome Research·D GordonP Green
May 20, 1999·Molecular Biology and Evolution·J H Badger, G J Olsen
Nov 5, 1999·Applied and Environmental Microbiology·J OverhageA Steinbüchel
Nov 11, 1999·Nucleic Acids Research·A L DelcherS L Salzberg
Dec 11, 1999·Nucleic Acids Research·F B Perler
Aug 12, 2000·Journal of Bacteriology·Q ChengV Nagarajan
Jan 3, 2001·Journal of Bacteriology·N Y ZhouP A Williams
Jun 27, 2001·Applied and Environmental Microbiology·C G FriedrichJ Fischer
Mar 13, 2002·Journal of Bacteriology·Alisa S VangnaiLuis A Sayavedra-Soto
Jun 1, 2002·Applied and Environmental Microbiology·Nicholas V ColemanJim C Spain
Oct 2, 2002·Systematic and Applied Microbiology·Albin AlfreiderWolfgang Babel
Jan 14, 2003·Genomics·John C DetterPaul M Richardson
Jan 22, 2003·Environmental Microbiology·José Ignacio JiménezEduardo Díaz
Feb 14, 2003·Bioinformatics·William HsiaoFiona S L Brinkman
Feb 18, 2003·Environmental Microbiology·Jan B Van BeilenBernard Witholt
Jul 3, 2003·Trends in Biotechnology·Veronique AlphandJohn M Woodley
Jul 10, 2003·Current Opinion in Biotechnology·Eva M Top, Dirk Springael
Nov 5, 2003·Proceedings of the National Academy of Sciences of the United States of America·C O JeonE L Madsen
Dec 23, 2003·Applied Microbiology and Biotechnology·H NojiriT Omori
Jun 10, 2004·Environmental Microbiology·N TrefaultB González
Oct 14, 2004·Bioinformatics·Paul Stothard, David S Wishart
Oct 19, 2004·Annual Review of Microbiology·Andrew B Reams, Ellen L Neidle
Dec 16, 2004·Archives of Microbiology·Timothy E MattesJames M Gossett
Jan 22, 2005·Environmental Microbiology·Stephanie A ConnonLewis Semprini
Apr 7, 2005·Applied and Environmental Microbiology·Jan B van BeilenWouter A Duetz
Jun 18, 2005·Current Opinion in Biotechnology·Jonathan J Dennis
Jul 8, 2005·Applied and Environmental Microbiology·Alexander LoyHarald Meier
Dec 13, 2005·Quarterly Reviews of Biophysics·Barry L Stoddard
Jan 5, 2006·Applied and Environmental Microbiology·Jan B van BeilenBernard Witholt
Jan 5, 2006·Applied and Environmental Microbiology·Mario VaneechoutteLenie Dijkshoorn
Feb 3, 2006·Journal of Bacteriology·Nelly DubarryDavid Lane
Oct 13, 2006·Proceedings of the National Academy of Sciences of the United States of America·Patrick S G ChainJames M Tiedje
Mar 3, 2007·International Journal of Systematic and Evolutionary Microbiology·Maria Sizova, Nicolai Panikov
Nov 24, 2007·Biochemical and Biophysical Research Communications·Fengfeng ZhouYing Xu
Citations
Jan 12, 2010·Archives of Microbiology·Jana GodocíkováBystrík Polek
Mar 5, 2009·Antonie van Leeuwenhoek·Géraldine A Van der AuweraEva M Top
Jun 16, 2010·Biodegradation·Shuguang XieAlison M Cupples
May 23, 2012·Environmental Science & Technology·Gláucia LimaJessica Meyer
Apr 5, 2013·The ISME Journal·Katherina HellBirgit Sattler
Jun 15, 2012·Journal of Biomolecular Structure & Dynamics·Joydeep ChakrabortyTapan K Dutta
Apr 14, 2009·Applied and Environmental Microbiology·Laura K JenningsJames M Gossett
Oct 19, 2010·Applied and Environmental Microbiology·Désirée Jakobs-SchönwandtMatthias Noll
Dec 17, 2009·Applied and Environmental Microbiology·Weimin SunAlison M Cupples
Jan 29, 2013·Applied and Environmental Microbiology·Shirley F NishinoJim C Spain
Aug 23, 2011·Applied and Environmental Microbiology·Jaejoon JungWoojun Park
Sep 26, 2012·AMB Express·Sebastian FabritzHarald Kolmar
Sep 8, 2011·PloS One·John L DarcySteven K Schmidt
Oct 21, 2014·Environmental Science & Technology·Zohre KurtJim C Spain
Aug 12, 2014·Biodegradation·Md Shahinoor IslamMohamed Gamal El-Din
Dec 26, 2012·Research in Microbiology·Tatyana Yu IzmalkovaAlexander M Boronin
Mar 8, 2011·Current Opinion in Biotechnology·Andreas Tiehm, Kathrin R Schmidt
Dec 28, 2010·Plasmid·Kristel MijnendonckxRob Van Houdt
Aug 3, 2010·Water Research·Marina HérySandrine Alfenore
Dec 8, 2009·Bioresource Technology·Chirayu DesaiDatta Madamwar
May 21, 2009·Environmental Microbiology·Jane M YagiEugene L Madsen
Oct 27, 2011·Environmental Microbiology·Danilo Pérez-PantojaBernardo González
Jun 1, 2011·Environmental Microbiology Reports·Nicholas V ColemanAndrew J Holmes
Jun 21, 2014·Environmental Microbiology·Takahiro SegawaNozomu Takeuchi
Dec 27, 2011·International Journal of Systematic and Evolutionary Microbiology·Rosa MargesinHans-Jürgen Busse
Jan 24, 2012·International Journal of Systematic and Evolutionary Microbiology·Richard Rosario-PassaperaCostantino Vetriani
Jul 9, 2011·Microbiology·Hyo Jung LeeChe Ok Jeon
May 4, 2015·Applied Microbiology and Biotechnology·Diego SalamancaDaniel Dobslaw
Feb 12, 2010·FEMS Microbiology Reviews·Timothy E MattesNicholas V Coleman
Oct 5, 2014·Extremophiles : Life Under Extreme Conditions·Katariina PärnänenHermanni Kaartokallio
Apr 30, 2016·The ISME Journal·Andrea FranzettiRoberto Ambrosini
Aug 1, 2016·Research in Microbiology·Xinzi WangDayi Zhang
Feb 18, 2016·PloS One·Fabyano Alvares Cardoso LopesRicardo Henrique Kruger
Feb 10, 2017·Frontiers in Microbiology·Talia N M JewellHarry R Beller
Jun 28, 2016·Applied and Environmental Microbiology·Jacob E MunroNicholas V Coleman
Aug 6, 2013·Applied and Environmental Microbiology·Masaru HosakaEiji Masai
Aug 26, 2014·Applied and Environmental Microbiology·Sonal DalviBabu Z Fathepure
Sep 23, 2018·Applied and Environmental Microbiology·Ashley M FrankAlison Buchan
Aug 18, 2017·Scientific Reports·Serena FraraccioOndrej Uhlik
Nov 7, 2019·Environmental Science and Pollution Research International·Fatemeh GholamiMohammad Ali Amoozegar
Aug 13, 2011·Organic & Biomolecular Chemistry·Daniel SchepsBernhard Hauer
Oct 5, 2011·Critical Reviews in Microbiology·Bin LiangShunpeng Li
Apr 6, 2017·Environmental Science and Pollution Research International·Iva DolinováAlena Ševců
Dec 6, 2016·Frontiers in Microbiology·Panagiotis GkorezisJaco Vangronsveld
Dec 22, 2016·Microbial Ecology·Roberto AmbrosiniAndrea Franzetti
Jun 6, 2017·Acta Crystallographica. Section F, Structural Biology Communications·Vanessa R PegosMikael Elias
Jul 4, 2018·Frontiers in Microbiology·Anna CiokLukasz Dziewit
Apr 20, 2019·Frontiers in Microbiology·Jeonghwan JangSatoshi Ishii
Aug 9, 2018·The ISME Journal·Jérôme ComteWarwick F Vincent
Jul 30, 2019·Frontiers in Microbiology·Malin BombergAnne Kontula