The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861)

Wellcome Open Research
Iliana BistaRichard Durbin

Abstract

We present a genome assembly for Cottoperca gobio (channel bull blenny, (Günther, 1861)); Chordata; Actinopterygii (ray-finned fishes), a temperate water outgroup for Antarctic Notothenioids. The size of the genome assembly is 609 megabases, with the majority of the assembly scaffolded into 24 chromosomal pseudomolecules. Gene annotation on Ensembl of this assembly has identified 21,662 coding genes.

References

Apr 15, 1997·Proceedings of the National Academy of Sciences of the United States of America·L ChenC H Cheng
Jun 23, 2009·Genome Research·Martin KrzywinskiMarco A Marra
Jun 11, 2015·Bioinformatics·Felipe A SimãoEvgeny M Zdobnov
May 7, 2016·Bioinformatics·William ChowKerstin Howe
Jul 29, 2016·Cell Systems·Neva C DurandErez Lieberman Aiden
Nov 1, 2016·Nature Methods·Chen-Shan ChinMichael C Schatz
Jul 14, 2017·BMC Genomics·Jay GhuryeChen-Shan Chin
Oct 20, 2017·Nature Ecology & Evolution·Alex DornburgThomas J Near
Feb 13, 2018·Cell Systems·James T RobinsonErez Lieberman Aiden
Dec 1, 2018·BMC Bioinformatics·Michael J RoachAnthony R Borneman
Dec 24, 2018·Database : the Journal of Biological Databases and Curation·Sarah E HuntFiona Cunningham
Feb 20, 2020·G3 : Genes - Genomes - Genetics·Richard ChallisMark Blaxter

❮ Previous
Next ❯

Datasets Mentioned

BETA
PRJEB19273
SAMEA104132835
SAMEA5365137
SAMEA5365124
SAMEA4872137
PRJEB30272

Methods Mentioned

BETA
Hi-C
RNA-seq
ICEFISH
chips

Software Mentioned

Dazzler
Solve
Juicebox
PBJelly
BioNano
gEVAL
Ensembl
Hi
bcftools
BlobToolKit

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

© 2021 Meta ULC. All rights reserved