PMID: 23525075DOI: 10.1038/ng.2586Mar 26, 2013

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

Nature Genetics
International Peach Genome InitiativeDaniel S Rokhsar

Abstract

Rosaceae is the most important fruit-producing clade, and its key commercially relevant genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types and compact diploid genomes. Peach, a diploid Prunus species, is one of the best genetically characterized deciduous trees. Here we describe the high-quality genome sequence of peach obtained from a completely homozygous genotype. We obtained a complete chromosome-scale assembly using Sanger whole-genome shotgun methods. We predicted 27,852 protein-coding genes, as well as noncoding RNAs. We investigated the path of peach domestication through whole-genome resequencing of 14 Prunus accessions. The analyses suggest major genetic bottlenecks that have substantially shaped peach genome diversity. Furthermore, comparative analyses showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable.

References

Mathematical model for studying genetic variation in terms of restriction endonucleases

Oct 1, 1979·Proceedings of the National Academy of Sciences of the United States of America·M Nei, W H Li

On the number of segregating sites in genetical models without recombination

Apr 1, 1975·Theoretical Population Biology·G A Watterson

Variances and covariances of squared linkage disequilibria in finite populations

Feb 1, 1988·Theoretical Population Biology·W G Hill, B S Weir

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Mar 1, 1997·Nucleic Acids Research·T M Lowe, Sean R Eddy

Sequence mapping by electronic PCR

May 1, 1997·Genome Research·Gregory D Schuler

The paleontology of intergene retrotransposons of maize

Sep 10, 1998·Nature Genetics·P SanMiguelJeffrey L Bennetzen

Ab initio gene finding in Drosophila genomic DNA

Apr 26, 2000·Genome Research·A Salamov, V V Solovyev

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

Dec 29, 2000·Nature·Arabidopsis Genome Initiative

Computational inference of homologous gene structures in the human genome

May 5, 2001·Genome Research·R F YehC B Burge

Protein dispensability and rate of evolution

Jun 29, 2001·Nature·A E Hirsh, H B Fraser

BLAT--the BLAST-like alignment tool

Apr 5, 2002·Genome Research·W James Kent

Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies

Apr 17, 2002·Journal of Molecular Evolution·Steven B CannonNevin D Young

Whole-genome sequence assembly for mammalian genomes: Arachne 2

Jan 17, 2003·Genome Research·David B JaffeEric S Lander

Human-mouse alignments with BLASTZ

Jan 17, 2003·Genome Research·Scott SchwartzWebb Miller

Carbohydrate metabolism of vegetative and reproductive sinks in the late-maturing peach cultivar 'Encore'

Mar 26, 2003·Tree Physiology·Riccardo Lo BiancoShi-Jean S. Sung

Cloning, expression, and characterization of sorbitol transporters from developing sour cherry fruit and leaf sink tissues

Apr 15, 2003·Plant Physiology·Zhifang GaoW H Loescher

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Sep 23, 2003·Nucleic Acids Research·Brian J HaasOwen White

Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes

Apr 29, 2004·Journal of Molecular Evolution·Shu-Miaw ChawWen-Hsiung Li

QTL analysis of quality traits in an advanced backcross between Prunus persica cultivars and the wild relative species P. davidiana

May 29, 2004·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·B QuilotK Moreau

DAGchainer: a tool for mining segmental genome duplications and synteny

Jul 13, 2004·Bioinformatics·Brian J HaasSteven L Salzberg

Identification of sorbitol transporters expressed in the phloem of apple source leaves

Sep 10, 2004·Plant & Cell Physiology·Junya WatariKatsuhiro Shiratake

Rfam: annotating non-coding RNAs in complete genomes

Dec 21, 2004·Nucleic Acids Research·Sam Griffiths-JonesAlex Bateman

De novo identification of repeat families in large genomes

Jun 18, 2005·Bioinformatics·Alkes L PricePavel A Pevzner

Repbase Update, a database of eukaryotic repetitive elements

Aug 12, 2005·Cytogenetic and Genome Research·J JurkaJ Walichiewicz

Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map

Aug 25, 2005·Genetics·Werner HowadPere Arús

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

Sep 27, 2005·PLoS Computational Biology·Ruiqiang LiJun Wang

Sorbitol metabolism and sink-source interconversions in developing apple leaves

Aug 1, 1982·Plant Physiology·W H LoescherR A Kennedy

Plant NBS-LRR proteins: adaptable guards

May 9, 2006·Genome Biology·Leah McHaleRichard W Michelmore

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Sep 16, 2006·Science·G A TuskanDaniel S Rokhsar

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

May 9, 2007·Nucleic Acids Research·Zhao Xu, Hao Wang

Nucleotide diversity and linkage disequilibrium in 11 expressed resistance candidate genes in Lolium perenne

Aug 9, 2007·BMC Plant Biology·Yongzhong XingThomas Lübberstedt

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

Aug 28, 2007·Nature·Olivier JaillonFrench-Italian Public Consortium for Grapevine Genome Characterization

Aligning multiple whole genomes with Mercator and MAVID

Nov 13, 2007·Methods in Molecular Biology·Colin N Dewey

Synteny and collinearity in plant genomes

Apr 26, 2008·Science·Haibao TangAndrew H Paterson

Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development

Aug 22, 2008·Plant Physiology·Aaron FaitAsaph Aharoni

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

Oct 4, 2008·Genome Research·Haibao TangAndrew H Paterson

Infernal 1.0: inference of RNA alignments

Mar 25, 2009·Bioinformatics·Eric P NawrockiSean R Eddy

Circos: an information aesthetic for comparative genomics

Jun 23, 2009·Genome Research·Martin KrzywinskiMarco A Marra

Genomics. Genome project standards in a new era of sequencing

Oct 10, 2009·Science·P S G ChainJ C Detter

The genome of the domesticated apple (Malus × domestica Borkh.)

Aug 31, 2010·Nature Genetics·Riccardo VelascoRoberto Viola

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

Nov 16, 2010·Nature Genetics·Hon-Ming LamGengyun Zhang

The genome of woodland strawberry (Fragaria vesca)

Dec 28, 2010·Nature Genetics·Vladimir ShulaevKevin M Folta

Whole-genome sequencing of multiple Arabidopsis thaliana populations

Aug 30, 2011·Nature Genetics·Jun CaoDetlef Weigel

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

Sep 29, 2011·Proceedings of the National Academy of Sciences of the United States of America·Antoine BrancaPeter Tiffin

rNA: a fast and accurate short reads numerical aligner

Nov 16, 2011·Bioinformatics·Francesco VezziAlberto Policriti

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies

Apr 6, 2012·BMC Genomics·Sook JungDaniel J Sargent

Comparison of the genetic determinism of two key phenological traits, flowering and maturity dates, in three Prunus species: peach, apricot and sweet cherry

Jul 26, 2012·Heredity·Elisabeth DirlewangerPere Arús

Genome wide identification of chilling responsive microRNAs in Prunus persica

Sep 18, 2012·BMC Genomics·Abdelali BarakatAlbert G Abbott

Citations

Tracing a key player in the regulation of plant architecture: the columnar growth habit of apple trees (Malus × domestica)

May 23, 2013·Planta·Romina Petersen, Clemens Krost

New approaches to Prunus transcriptome analysis

May 18, 2011·Genetica·Pedro Martínez-GómezManuel Rubio

Deep RNA-Seq uncovers the peach transcriptome landscape

Jun 21, 2013·Plant Molecular Biology·Lu WangYuepeng Han

Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum)

Sep 18, 2013·Proceedings of the National Academy of Sciences of the United States of America·Tarang K MehtaByrappa Venkatesh

Clarifying omics concepts, challenges, and opportunities for Prunus breeding in the postgenomic era

Mar 8, 2012·Omics : a Journal of Integrative Biology·Pedro Martínez-GómezManuel Rubio

The Amborella genome and the evolution of flowering plants

Dec 21, 2013·Science·Amborella Genome Project

Peach genetic resources: diversity, population structure and linkage disequilibrium

Sep 18, 2013·BMC Genetics·Xiong-Wei LiMaria José Aranzana

An integrative "omics" approach identifies new candidate genes to impact aroma volatiles in peach fruit

May 25, 2013·BMC Genomics·Gerardo SánchezAntonio Granell

Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants

Nov 5, 2013·BMC Genomics·Jonathan Fresnedo-RamírezThomas M Gradziel

Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica

Dec 18, 2013·BMC Genomics·Juha ImmanenYkä Helariutta

Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach

Oct 24, 2013·BMC Plant Biology·Raul PironaLaura Rossini

Combining phylogenetic and syntenic analyses for understanding the evolution of TCP ECE genes in eudicots

Sep 11, 2013·PloS One·Hélène L CiterneCatherine Damerval

Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids

Oct 25, 2013·PloS One·Sara MontanariDavid Chagné

Application of genomic and quantitative genetic tools to identify candidate resistance genes for brown rot resistance in peach

Nov 19, 2013·PloS One·Pedro J Martínez-GarcíaCarlos H Crisosto

An extensive evaluation of read trimming effects on Illumina NGS data analysis

Jan 1, 2014·PloS One·Cristian Del FabbroFederico M Giorgi

Identification, classification and differential expression of oleosin genes in tung tree (Vernicia fordii)

Feb 12, 2014·PloS One·Heping CaoJay M Shockey

A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach

Mar 7, 2014·PloS One·Elisa VendraminLaura Rossini

Transcriptome analysis of differentially expressed genes relevant to variegation in peach flowers

Mar 8, 2014·PloS One·Yingnan ChenTongming Yin

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett')

Apr 5, 2014·PloS One·David ChagnéRiccardo Velasco

Comparative genomic analysis reveals multiple long terminal repeats, lineage-specific amplification, and frequent interelement recombination for Cassandra retrotransposon in pear (Pyrus bretschneideri Rehd.)

Jun 6, 2014·Genome Biology and Evolution·Hao YinShaoling Zhang

Archaeological evidence for peach (Prunus persica) cultivation and domestication in China

Sep 6, 2014·PloS One·Yunfei ZhengXugao Chen

Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species

Nov 28, 2013·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Hideki HirakawaSachiko Isobe

Quantitative trait loci affecting reproductive phenology in peach

Feb 25, 2014·BMC Plant Biology·José RomeuGabino Ríos

Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment

Jun 15, 2014·BMC Bioinformatics·Osamu GotohDavid R Nelson

The peach volatilome modularity is reflected at the genetic and environmental response levels in a QTL mapping population

Jun 3, 2014·BMC Plant Biology·Gerardo SánchezAntonio Granell

Characterization of the lipoxygenase (LOX) gene family in the Chinese white pear (Pyrus bretschneideri) and comparison with other members of the Rosaceae

Jun 8, 2014·BMC Genomics·Meng LiShaoling Zhang

Identification and characterization of CYP79D16 and CYP71AN24 catalyzing the first and second steps in L-phenylalanine-derived cyanogenic glycoside biosynthesis in the Japanese apricot, Prunus mume Sieb. et Zucc

Jul 13, 2014·Plant Molecular Biology·Takuya YamaguchiYasuhisa Asano

Plant protein peptidase inhibitors: an evolutionary overview based on comparative genomics

Sep 26, 2014·BMC Genomics·María Estrella SantamaríaManuel Martinez

Cassava genome from a wild ancestor to cultivated varieties

Oct 11, 2014·Nature Communications·Wenquan WangMing Peng

Regulation of anthocyanin biosynthesis in peach fruits

May 16, 2014·Planta·Md Abdur RahimLivio Trainotti

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants

Jan 13, 2015·BMC Genomics·Chunfang ZhengDavid Sankoff

GREENC: a Wiki-based database of plant lncRNAs

Nov 19, 2015·Nucleic Acids Research·Andreu Paytuví GallartR Aiese Cigliano

Gramene 2016: comparative plant genomics and pathway resources

Nov 11, 2015·Nucleic Acids Research·Marcela K Tello-RuizDoreen Ware

Bagging treatment influences production of C6 aldehydes and biosynthesis-related gene expression in peach fruit skin

Sep 2, 2014·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Ji-Yuan ShenKunsong Chen

Genome-wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca)

Sep 12, 2015·The New Phytologist·Stéphanie MarietteVéronique Decroocq

On the role of ethylene, auxin and a GOLVEN-like peptide hormone in the regulation of peach ripening

Feb 13, 2016·BMC Plant Biology·Alice TadielloLivio Trainotti

Genomic resources in fruit plants: an assessment of current status

Mar 22, 2014·Critical Reviews in Biotechnology·Manoj K Rai, N S Shekhawat

Transcriptome analysis and transient transformation suggest an ancient duplicated MYB transcription factor as a candidate gene for leaf red coloration in peach

Jan 1, 2015·BMC Plant Biology·Ying ZhouYuepeng Han

Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios

Nov 26, 2014·BMC Plant Biology·Elsa DesnouesBenedicte Quilot-Turion

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism

Nov 15, 2015·Plant Science : an International Journal of Experimental Plant Biology·Federico ScossaAlisdair R Fernie

Expression of ABA Metabolism-Related Genes Suggests Similarities and Differences Between Seed Dormancy and Bud Dormancy of Peach (Prunus persica)

Jan 23, 2016·Frontiers in Plant Science·Dongling WangDongsheng Gao

Evolution of NBS-LRR gene copies among Dicot plants and its regulation by members of the miR482/2118 superfamily of miRNAs

Feb 15, 2015·Molecular Plant·Víctor M GonzálezPere Puigdomènech

P-MITE: a database for plant miniature inverted-repeat transposable elements

Nov 1, 2013·Nucleic Acids Research·Jiongjiong ChenHanhui Kuang

The Genome Database for Rosaceae (GDR): year 10 update

Nov 15, 2013·Nucleic Acids Research·Sook JungDorrie Main

Sugars in peach fruit: a breeding perspective

Jan 28, 2016·Horticulture Research·Marco CirilliAngelo Ciacciulli

Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

Jan 19, 2016·Mobile DNA·Shuang JiangYuanwen Teng

Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops

Aug 1, 2014·Genome Biology·Ke CaoJun Wang

The evolutionary landscape of PRC1 core components in green lineage

Jan 6, 2016·Planta·Dong-hong ChenWen-Hui Shen

Evolution of plant genome architecture

Mar 2, 2016·Genome Biology·Jonathan F WendelRod A Wing

Genome-Wide Identification, Evolution and Functional Divergence of MYB Transcription Factors in Chinese White Pear (Pyrus bretschneideri)

Feb 14, 2016·Plant & Cell Physiology·Xiaolong LiJun Wu

Evolutionary origin of Rosaceae-specific active non-autonomous hAT elements and their contribution to gene regulation and genomic structural variation

Mar 5, 2016·Plant Molecular Biology·Lu WangYuepeng Han

Analysis of basic leucine zipper genes and their expression during bud dormancy in peach (Prunus persica)

Apr 24, 2016·Plant Physiology and Biochemistry : PPB·Mingyue SunDongsheng Gao

A brachytic dwarfism trait (dw) in peach trees is caused by a nonsense mutation within the gibberellic acid receptor PpeGID1c

Dec 8, 2015·The New Phytologist·Courtney A HollenderChris Dardick

Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication

Jan 16, 2016·International Journal of Genomics·Xiao-Long WangJinsong Xiong

Identification of a recently active Prunus-specific non-autonomous Mutator element with considerable genome shaping force

May 13, 2014·The Plant Journal : for Cell and Molecular Biology·Júlia HalászAttila Hegedűs

Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy

Mar 10, 2016·Molecular Genetics and Genomics : MGG·Min ChenDongsheng Gao

Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach

Feb 7, 2016·Journal of Experimental Botany·Chao GuYuepeng Han

Genomics and the Contrasting Dynamics of Annual and Perennial Domestication

Nov 26, 2015·Trends in Genetics : TIG·Brandon S GautPeter L Morrell

Proteomic analysis of a segregant population reveals candidate proteins linked to mealiness in peach

Oct 16, 2015·Journal of Proteomics·Andréa Miyasaka AlmeidaAriel Orellana

De novo transcriptome assembly of two different peach cultivars grown in Korea

Dec 24, 2015·Genomics Data·Yeonhwa JoWon Kyong Cho

Ancestors of modern plant crops

Mar 18, 2016·Current Opinion in Plant Biology·Jérôme Salse

Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach

Jul 17, 2013·The Plant Journal : for Cell and Molecular Biology·Rachele FalchiMichele Morgante

PpeTAC1 promotes the horizontal growth of branches in peach trees and is a member of a functionally conserved gene family found in diverse plants species

May 15, 2013·The Plant Journal : for Cell and Molecular Biology·Chris DardickRalph Scorza

Comparative genomics analysis in Prunoideae to identify biologically relevant polymorphisms

Jun 15, 2013·Plant Biotechnology Journal·Tyson KoepkeAmit Dhingra

MicroRNAs in fruit trees: discovery, diversity and future research directions

Apr 23, 2014·Plant Biology·M C SolofohariveloS L Murray

Molecular basis of angiosperm tree architecture

Dec 9, 2014·The New Phytologist·Courtney A Hollender, Chris Dardick

Genetic determinism of phenological traits highly affected by climate change in Prunus avium: flowering date dissected into chilling and heat requirements

Jan 15, 2014·The New Phytologist·Sophie CastèdeElisabeth Dirlewanger

Genome-wide identification and expression analyses of cytochrome P450 genes in mulberry (Morus notabilis)

Dec 7, 2013·Journal of Integrative Plant Biology·Bi MaNingjia He

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors

Feb 18, 2015·The Plant Journal : for Cell and Molecular Biology·Hui ZhouYuepeng Han

Evolution of a symbiotic receptor through gene duplications in the legume-rhizobium mutualism

Jan 10, 2014·The New Phytologist·Stéphane De MitaRene Geurts

Comprehensive Phylogenetic Analysis Sheds Light on the Diversity and Origin of the MLO Family of Integral Membrane Proteins

Feb 20, 2016·Genome Biology and Evolution·Stefan KuschRalph Panstruga

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses

Sep 21, 2015·Chromosome Research : an International Journal on the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology·Fabíola Carvalho SantosAndré Luís Laforga Vanzela

Genomics of pear and other Rosaceae fruit trees

Apr 14, 2016·Breeding Science·Toshiya Yamamoto, Shingo Terakami

Two ω-3 FADs Are Associated with Peach Fruit Volatile Formation

Apr 5, 2016·International Journal of Molecular Sciences·Jiaojiao WangKunsong Chen

Transcriptomic analysis of fruit stored under cold conditions using controlled atmosphere in Prunus persica cv. "Red Pearl"

Oct 21, 2015·Frontiers in Plant Science·Dayan SanhuezaClaudio Meneses

PpYUC11, a strong candidate gene for the stony hard phenotype in peach (Prunus persica L. Batsch), participates in IAA biosynthesis during fruit ripening

Aug 27, 2015·Journal of Experimental Botany·Lei PanZhiqiang Wang

Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome

Jul 16, 2015·Molecular Biology and Evolution·Walter SanseverinoJosep M Casacuberta

A small indel mutation in an anthocyanin transporter causes variegated colouration of peach flowers

Sep 12, 2015·Journal of Experimental Botany·Jun ChengYuepeng Han

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

May 29, 2015·The Plant Journal : for Cell and Molecular Biology·René L WarrenJoerg Bohlmann

Cinnamyl alcohol dehydrogenases in the mesocarp of ripening fruit of Prunus persica genotypes with different flesh characteristics: changes in activity and protein and transcript levels

Dec 24, 2014·Physiologia Plantarum·Damiano GabottiMaurizio Cocucci

Genome-Wide Analysis of Oleosin Gene Family in 22 Tree Species: An Accelerator for Metabolic Engineering of BioFuel Crops and Agrigenomics Industrial Applications?

Aug 11, 2015·Omics : a Journal of Integrative Biology·Heping Cao

In silico search and biological validation of microRNAs related to drought response in peach and almond

Apr 14, 2016·Functional & Integrative Genomics·Fazileh EsmaeiliPedro Martínez-Gómez

Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening

Jul 28, 2015·Food Chemistry·Laura L MontiMaría Fabiana Drincovich

HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry (Fragaria×ananassa)

Nov 15, 2015·Plant Science : an International Journal of Experimental Plant Biology·Daniel J SargentThomas M Davis

Mining microsatellites in the peach genome: development of new long-core SSR markers for genetic analyses in five Prunus species

Jul 18, 2015·SpringerPlus·Maria Teresa DettoriGuido Cipriani

Prunus transcription factors: breeding perspectives

Jul 1, 2015·Frontiers in Plant Science·Valmor J BianchiPedro Martínez-Gómez

Biotechnological strategies and tools for Plum pox virus resistance: trans-, intra-, cis-genesis, and beyond

Jun 25, 2015·Frontiers in Plant Science·Vincenza Ilardi, Mario Tavazza

High resolution physical mapping of single gene fragments on pachytene chromosome 4 and 7 of Rosa

Jul 3, 2015·BMC Genetics·Ilya V KirovLudmila I Khrustaleva

Species-specific duplications driving the recent expansion of NBS-LRR genes in five Rosaceae species

Mar 12, 2015·BMC Genomics·Yan ZhongZong-Ming Max Cheng

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Mar 15, 2015·BMC Genomics·Isabelle LesurChristophe Plomion

Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

Feb 5, 2015·BMC Plant Biology·Romina PetersenErwin Robert Schmidt

Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species

Jan 22, 2015·BMC Plant Biology·Xin QiaoShaoling Zhang

Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly

Jan 24, 2015·BMC Genomics·Jason M ArgyrisJordi Garcia-Mas

RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit

Jan 23, 2015·BMC Genomics·Daniel Garcia-SecoBeatriz Ramos-Solano

A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch

Apr 8, 2015·BMC Plant Biology·Christina Elizabeth WellsDouglas Gary Bielenberg

Discovery of novel genes derived from transposable elements using integrative genomic analysis

Feb 26, 2015·Molecular Biology and Evolution·Douglas R Hoen, Thomas E Bureau

Comparative analysis of plant carbohydrate active enZymes and their role in xylogenesis

May 23, 2015·BMC Genomics·Desre PinardAlexander A Myburg

Proteome analysis of pear reveals key genes associated with fruit development and quality

Feb 16, 2015·Planta·Jiaming LiJun Wu

Extreme expansion of NBS-encoding genes in Rosaceae

May 4, 2015·BMC Genetics·Yanxiao JiaXiaohui Zhang

Sequencing consolidates molecular markers with plant breeding practice

Mar 31, 2015·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Huaan YangShancen Zhao

Plant carotenoids: genomics meets multi-gene engineering

Jun 10, 2014·Current Opinion in Plant Biology·Giovanni Giuliano

Progress, challenges and the future of crop genomes

Feb 24, 2015·Current Opinion in Plant Biology·Todd P Michael, Robert VanBuren

Oxidative stress associated with rootstock-scion interactions in pear/quince combinations during early stages of graft development

Dec 30, 2014·Journal of Plant Physiology·Patricia IrisarriAna Pina

Genome sequencing and population genomics in non-model organisms

Oct 22, 2013·Trends in Ecology & Evolution·Hans Ellegren

Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement

Apr 16, 2015·Genetics Research International·Arun Prabhu Dhanapal, Mahalingam Govindaraj

Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops

Feb 1, 2015·Genome Biology and Evolution·Florent MuratJérôme Salse

MnTEdb, a collective resource for mulberry transposable elements

Mar 1, 2015·Database : the Journal of Biological Databases and Curation·Bi MaNingjia He

The Malus domestica sugar transporter gene family: identifications based on genome and expression profiling related to the accumulation of fruit sugars

Nov 22, 2014·Frontiers in Plant Science·Xiaoyu WeiMingjun Li

Recent advancements to study flowering time in almond and other Prunus species

Jul 30, 2014·Frontiers in Plant Science·R Sánchez-PérezPedro Martínez-Gómez

Light-controlled flavonoid biosynthesis in fruits

Oct 28, 2014·Frontiers in Plant Science·Laura ZorattiLaura Jaakola

Evolution of the fruit endocarp: molecular mechanisms underlying adaptations in seed protection and dispersal strategies

Jul 11, 2014·Frontiers in Plant Science·Chris Dardick, Ann M Callahan

PLAZA 3.0: an access point for plant comparative genomics

Oct 18, 2014·Nucleic Acids Research·Sebastian ProostKlaas Vandepoele

Dynamic QTLs for sugars and enzyme activities provide an overview of genetic control of sugar metabolism during peach fruit development

Apr 28, 2016·Journal of Experimental Botany·Elsa DesnouesBenedicte Quilot-Turion

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps

Dec 6, 2014·Genome Biology and Evolution·Jacob A TennessenAaron Liston

TNL genes in peach: insights into the post-LRR domain

May 1, 2016·BMC Genomics·Cyril Van Ghelder, Daniel Esmenjaud

De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes

Jun 27, 2015·PloS One·Yevgen Zolotarov, Martina Strömvik

Mongolian Almond (Prunus mongolica Maxim): The Morpho-Physiological, Biochemical and Transcriptomic Response to Drought Stress

Apr 22, 2015·PloS One·Jǖgang WangWei Yan

Resistance to root-knot nematodes Meloidogyne spp. in woody plants

Apr 30, 2016·The New Phytologist·Simon Bernard SaucetDaniel Esmenjaud

Constitutive Activation of an Anthocyanin Regulatory Gene PcMYB10.6 Is Related to Red Coloration in Purple-Foliage Plum

Aug 8, 2015·PloS One·Chao GuYuepeng Han

Genome-Wide Characterization of Simple Sequence Repeat (SSR) Loci in Chinese Jujube and Jujube SSR Primer Transferability

May 23, 2015·PloS One·Jing XiaoZhi-Hui Zhao

Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq

Jun 1, 2016·Frontiers in Physiology·Lei GaoGuohuai Li

Brown Rot Strikes Prunus Fruit: An Ancient Fight Almost Always Lost

May 3, 2016·Journal of Agricultural and Food Chemistry·Leandro Oliveira LinoBenedicte Quilot-Turion

De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress

Aug 15, 2014·PloS One·Sadegh MousaviSaadollah Houshmand

Genotyping-by-sequencing in an orphan plant species Physocarpus opulifolius helps identify the evolutionary origins of the genus Prunus

May 14, 2016·BMC Research Notes·Matteo ButiRiccardo Velasco

Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS)

May 27, 2015·PloS One·Verónica GuajardoPatricio Hinrichsen

Genome-wide view of genetic diversity reveals paths of selection and cultivar differentiation in peach domestication

Apr 17, 2016·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Takashi AkagiRyutaro Tao

Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes

Nov 14, 2014·PloS One·Scott SchaefferAmit Dhingra

Mapping of Candidate Genes Involved in Bud Dormancy and Flowering Time in Sweet Cherry (Prunus avium)

Nov 21, 2015·PloS One·Sophie CastèdeElisabeth Dirlewanger

tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species

Jul 16, 2014·PloS One·Joanne R RussellIan K Dawson

Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm

Sep 10, 2015·PloS One·Diego MichelettiMaria José Aranzana

Identification of Genetic Loci Associated with Quality Traits in Almond via Association Mapping

Jun 26, 2015·PloS One·Carolina Font i ForcadaAngel Fernández I Martí

Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.)

Jun 17, 2016·Scientific Reports·Ming-Yue ZhangJun Wu

Application of Somatic Embryogenesis in Woody Plants

Jul 26, 2016·Frontiers in Plant Science·Yuan GuanZhen-Hong Su

Genome-Wide Sequence Variation Identification and Floral-Associated Trait Comparisons Based on the Re-sequencing of the 'Nagafu No. 2' and 'Qinguan' Varieties of Apple (Malus domestica Borkh.)

Jul 26, 2016·Frontiers in Plant Science·Libo XingMingyu Han

Profiling Taste and Aroma Compound Metabolism during Apricot Fruit Development and Ripening

Jun 28, 2016·International Journal of Molecular Sciences·Wanpeng XiWenhui Li

The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols

May 5, 2016·The Plant Journal : for Cell and Molecular Biology·Pedro J Martínez-GarcíaDavid B Neale

The genome of black raspberry (Rubus occidentalis)

May 27, 2016·The Plant Journal : for Cell and Molecular Biology·Robert VanBurenTodd C Mockler

Transcriptome analysis of seed dormancy after rinsing and chilling in ornamental peaches (Prunus persica (L.) Batsch)

Aug 10, 2016·BMC Genomics·Worarad KanjanaKenji Yamane

Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function

Aug 25, 2016·Scientific Reports·Jianqing ChenJuyou Wu

Assessment of Sugar Components and Genes Involved in the Regulation of Sucrose Accumulation in Peach Fruit

Aug 19, 2016·Journal of Agricultural and Food Chemistry·Sornkanok VimolmangkangYuepeng Han

Towards integration of population and comparative genomics in forest trees

Aug 31, 2016·The New Phytologist·Pär K IngvarssonNathaniel R Street

Widespread natural variation of DNA methylation within angiosperms

Sep 28, 2016·Genome Biology·Chad E NiederhuthRobert J Schmitz

New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance

Aug 3, 2016·Molecular Ecology·Stéphane DecroocqVéronique Decroocq

Field Guide to Plant Model Systems

Oct 8, 2016·Cell·Caren ChangElliot M Meyerowitz

The R2R3 MYB transcription factor PavMYB10.1 involves in anthocyanin biosynthesis and determines fruit skin colour in sweet cherry (Prunus avium L.)

Apr 24, 2016·Plant Biotechnology Journal·Wanmei JinKaichun Zhang

Mutation rate analysis via parent-progeny sequencing of the perennial peach. II. No evidence for recombination-associated mutation

Nov 1, 2016·Proceedings. Biological Sciences·Long WangLaurence D Hurst

Mutation rate analysis via parent-progeny sequencing of the perennial peach. I. A low rate in woody perennials and a higher mutagenicity in hybrids

Nov 1, 2016·Proceedings. Biological Sciences·Zhengqing XieLaurence D Hurst

Multiple R2R3-MYB Transcription Factors Involved in the Regulation of Anthocyanin Accumulation in Peach Flower

Nov 8, 2016·Frontiers in Plant Science·Hui ZhouYuepeng Han

Systematic Analysis of the 4-Coumarate:Coenzyme A Ligase (4CL) Related Genes and Expression Profiling during Fruit Development in the Chinese Pear

Oct 25, 2016·Genes·Yunpeng CaoYongping Cai

A Japanese plum α-l-arabinofuranosidase/β-D-xylosidase gene is developmentally regulated by alternative splicing

Jan 13, 2015·Plant Science : an International Journal of Experimental Plant Biology·M Carolina Di SantoGabriel O Sozzi

Comparative genomics suggests that an ancestral polyploidy event leads to enhanced root nodule symbiosis in the Papilionoideae

Sep 7, 2013·Molecular Biology and Evolution·Qi-Gang LiYuan-Ming Zhang

Identification and Expression Analysis of Polygalacturonase Family Members during Peach Fruit Softening

Nov 22, 2016·International Journal of Molecular Sciences·Ming QianCaiping Zhao

Inhibition of Recombinant Aldose-6-Phosphate Reductase from Peach Leaves by Hexose-Phosphates, Inorganic Phosphate and Oxidants

Dec 25, 2016·Plant & Cell Physiology·Matías D HartmanAlberto A Iglesias

MicroRNA annotation of plant genomes - Do it right or not at all

Jan 6, 2017·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·Richard S TaylorPhilip C J Donoghue

Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD Sequencing

Oct 3, 2015·PloS One·Luxian LiuChengxin Fu

Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch

Oct 3, 2015·PloS One·Douglas Gary BielenbergChristina Elizabeth Wells

Glucitol dehydrogenase from peach (Prunus persica) fruits is regulated by thioredoxin h

Apr 22, 2014·Plant & Cell Physiology·Matías D HartmanAlberto A Iglesias

Wood biosynthesis and typologies: a molecular rhapsody

May 31, 2014·Tree Physiology·Gea GuerrieroJean-Francois Hausman

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection

Feb 18, 2016·Scientific Reports·Tim KamberBrion Duffy

DRO1 influences root system architecture in Arabidopsis and Prunus species

Dec 29, 2016·The Plant Journal : for Cell and Molecular Biology·Jessica M GusemanChris Dardick

Reconstructing the genome of the most recent common ancestor of flowering plants

Mar 14, 2017·Nature Genetics·Florent MuratJérôme Salse

Genome-wide Annotation and Comparative Analysis of Long Terminal Repeat Retrotransposons between Pear Species of P. bretschneideri and P. Communis

Dec 4, 2015·Scientific Reports·Hao YinShaoling Zhang

An integrated database of wood-formation related genes in plants

Jun 17, 2015·Scientific Reports·Ting XuJianquan Liu

Peaches Preceded Humans: Fossil Evidence from SW China

Nov 27, 2015·Scientific Reports·Tao SuZhekun Zhou

Novel Insights into Tree Biology and Genome Evolution as Revealed Through Genomics

Feb 23, 2017·Annual Review of Plant Biology·David B NealeXiao-Xin Wei

The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding

May 26, 2017·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Kenta ShirasawaSachiko Isobe

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)

Jan 26, 2017·Scientific Reports·Kazuki MoriHidetoshi Ikegami

DNA-informed breeding of rosaceous crops: promises, progress and prospects

Mar 23, 2017·Horticulture Research·Cameron Peace

A disulfide bond A-like oxidoreductase is a strong candidate gene for self-incompatibility in apricot (Prunus armeniaca) pollen

Oct 17, 2017·Journal of Experimental Botany·Juan Vicente Muñoz-SanzCarlos Romero

Phylogenomics of MADS-Box Genes in Plants - Two Opposing Life Styles in One Gene Family

Jan 1, 2013·Biology·Lydia Gramzow, Günter Theißen

Genome-Wide Profiling of Small RNAs and Degradome Revealed Conserved Regulations of miRNAs on Auxin-Responsive Genes during Fruit Enlargement in Peaches

Dec 14, 2017·International Journal of Molecular Sciences·Mengya ShiYueping Liu

DNA methylation and small interference RNAs participate in the regulation of MADS-box genes involved in dormancy in sweet cherry (Prunus avium L.)

May 26, 2017·Tree Physiology·Karin RothkegelAndréa Miyasaka Almeida

An integrated approach for increasing breeding efficiency in apple and peach in Europe

Mar 7, 2018·Horticulture Research·Francois LaurensEric van de Weg

Developing gene-tagged molecular markers for evaluation of genetic association of appleSWEET genes with fruit sugar accumulation

Mar 28, 2018·Horticulture Research·Qiaoling ZhenYuepeng Han

Improving Nelumbo nucifera genome assemblies using high-resolution genetic maps and BioNano genome mapping reveals ancient chromosome rearrangements

Mar 27, 2018·The Plant Journal : for Cell and Molecular Biology·Songtao GuiYi Ding

Genome structure of Rosa multiflora, a wild ancestor of cultivated roses

Oct 19, 2017·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Noriko NakamuraYoshikazu Tanaka

Genome Re-Sequencing of Diverse Sweet Cherry (Prunus avium) Individuals Reveals a Modifier Gene Mutation Conferring Pollen-Part Self-Compatibility

Apr 11, 2018·Plant & Cell Physiology·Kentaro OnoRyutaro Tao

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

May 3, 2018·Proceedings of the National Academy of Sciences of the United States of America·Robin van VelzenRene Geurts

Transcriptomic and Functional Analyses Reveal That PpGLK1 Regulates Chloroplast Development in Peach (Prunus persica )

Feb 13, 2018·Frontiers in Plant Science·Min ChenLing Li

Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars

Feb 26, 2016·BMC Plant Biology·José A CampoyTeresa Barreneche

Chromatin-associated regulation of sorbitol synthesis in flower buds of peach

Oct 19, 2017·Plant Molecular Biology·Alba LloretGabino Ríos

The complex jujube genome provides insights into fruit tree biology

Oct 29, 2014·Nature Communications·Mengjun LiuLong-Hai Luo

Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics

Apr 21, 2018·Molecular Ecology·Quiterie HaenelDaniel Berner

Mapping X-Disease Phytoplasma Resistance in Prunus virginiana

Dec 15, 2017·Frontiers in Plant Science·Ryan R Lenz, Wenhao Dai

Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes

Sep 30, 2017·The New Phytologist·Haomin LyuSuhua Shi

Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

Dec 5, 2017·BMC Genomics·Shaoxuan LiDongsheng Gao

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach

Dec 21, 2017·Frontiers in Genetics·Tokurou ShimizuYasukazu Nakamura

Genome-wide analysis of SSR and ILP markers in trees: diversity profiling, alternate distribution, and applications in duplication

Dec 22, 2017·Scientific Reports·Xinyao XiaLong Yang

Genome-wide identification and classification of MYB superfamily genes in peach

Jun 22, 2018·PloS One·Chunhua ZhangMingliang Yu

The genome sequence of 'Kurodagosun', a major carrot variety in Japan and China, reveals insights into biological research and carrot breeding

Mar 3, 2018·Molecular Genetics and Genomics : MGG·Feng WangAi-Sheng Xiong

RNA-Seq analysis unveils gene regulation of fruit size cooperatively determined by velocity and duration of fruit swelling in peach

Apr 1, 2018·Physiologia Plantarum·Chao GuShaoling Zhang

Pinaceae show elevated rates of gene turnover that are robust to incomplete gene annotation

Jun 15, 2018·The Plant Journal : for Cell and Molecular Biology·Claudio Casola, Tomasz E Koralewski

Genome survey sequencing of Dioscorea zingiberensis

Jun 9, 2018·Genome Génome / Conseil National De Recherches Canada·Wen ZhouZhezhi Wang

Horizontal transfers of LTR retrotransposons in seven species of Rosales

Jun 30, 2018·Genome Génome / Conseil National De Recherches Canada·Fei HouNingjia He

Genome-Wide Characterization of DNA Demethylase Genes and Their Association with Salt Response in Pyrus

Aug 8, 2018·Genes·Chunxiao LiuYonghong Chang

The red bayberry genome and genetic basis of sex determination

Jul 12, 2018·Plant Biotechnology Journal·Hui-Min JiaZhongshan Gao

Genomics: a potential panacea for the perennial problem

Oct 19, 2014·American Journal of Botany·Kendra A McClureSean Myles

Genetic diversity in Malus ×domestica (Rosaceae) through time in response to domestication

Oct 19, 2014·American Journal of Botany·Briana L GrossGayle M Volk

Activator-type R2R3-MYB genes induce a repressor-type R2R3-MYB gene to balance anthocyanin and proanthocyanidin accumulation

Sep 18, 2018·The New Phytologist·Hui ZhouYuepeng Han

Genome Survey Sequencing for the Characterization of the Genetic Background of Rosa roxburghii Tratt and Leaf Ascorbate Metabolism Genes

Feb 6, 2016·PloS One·Min LuLiangliang Li

A Prunus persica genome-wide RNA-seq approach uncovers major differences in the transcriptome among chilling injury sensitive and non-sensitive varieties

Sep 12, 2018·Physiologia Plantarum·Ricardo Nilo-PoyancoReinaldo Campos-Vargas

Genome-wide association study of 12 agronomic traits in peach

Nov 9, 2016·Nature Communications·Ke CaoLirong Wang

Resistance to Plum Pox Virus (PPV) in apricot (Prunus armeniaca L.) is associated with down-regulation of two MATHd genes

Jan 29, 2018·BMC Plant Biology·Elena ZuriagaMaría Luisa Badenes

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data

Feb 10, 2018·Horticulture Research·Rubina JibranDavid Chagné

Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development

Feb 23, 2019·PloS One·Yunpeng CaoYongping Cai

New Data Completing the Spectrum of the Ma, RMia, and RMja Genes for Resistance to Root-Knot Nematodes (Meloidogyne spp.) in Prunus

Sep 27, 2018·Phytopathology·Henri DuvalDaniel Esmenjaud

Evolutionary Genomics of Peach and Almond Domestication

Oct 7, 2016·G3 : Genes - Genomes - Genetics·Dianne VelascoJeffrey Ross-Ibarra

Reconstruction of ancestral genome reveals chromosome evolution history for selected legume species

Mar 6, 2019·The New Phytologist·Longhui RenSteven B Cannon

Population genomic analysis of mango (Mangifera indica) suggests a complex history of domestication

Feb 8, 2019·The New Phytologist·Emily J Warschefsky, Eric J B von Wettberg

How sequence variants of a plastid-replicating viroid with one single nucleotide change initiate disease in its natural host

Apr 17, 2019·RNA Biology·Sonia DelgadoRicardo Flores

Advances in genomic, transcriptomic, proteomic, and metabolomic approaches to study biotic stress in fruit crops

May 10, 2019·Critical Reviews in Biotechnology·Tong LiAi-Sheng Xiong

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

Nov 10, 2015·Nature Communications·Khaled M HazzouriMichael D Purugganan

High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity

Nov 26, 2015·Bioprocess and Biosystems Engineering·Yesupatham SathishkumarYang Soo Lee

High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow

Jun 28, 2019·PloS One·Stijn VanderzandeCameron Peace

Association of the phenylpropanoid pathway with dormancy and adaptive trait variation in apricot (Prunus armeniaca)

May 10, 2019·Tree Physiology·Anna O ConradAlbert G Abbott

Phased genome sequence of an interspecific hybrid flowering cherry, 'Somei-Yoshino' (Cerasus × yedoensis)

Jul 24, 2019·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Kenta ShirasawaSachiko Isobe

Sequencing of a Wild Apple (Malus baccata ) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance

May 28, 2019·G3 : Genes - Genomes - Genetics·Xilong ChenNa An

A Genetic Algorithm to Optimize Weighted Gene Co-Expression Network Analysis

Jul 30, 2019·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·David ToubianaEduardo Blumwald

Hybrid de novo genome assembly of Chinese chestnut (Castanea mollissima)

Sep 13, 2019·GigaScience·Yu XingLing Qin

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Jun 28, 2017·The Plant Journal : for Cell and Molecular Biology·Gaihua QinYiliu Xu

Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo

Jun 13, 2018·GigaScience·Mian XiaXing Wang Deng

Updated Genome Assembly and Annotation for Metrosideros polymorpha , an Emerging Model Tree Species of Ecological Divergence

Sep 22, 2019·G3 : Genes - Genomes - Genetics·Ayako IzunoKentaro K Shimizu

High-density mapping suggests cytoplasmic male sterility with two restorer genes in almond × peach progenies

Oct 28, 2015·Horticulture Research·José Manuel DonosoPere Arús

The complex evolutionary history of apricots: Species divergence, gene flow and multiple domestication events

Nov 4, 2019·Molecular Ecology·Shuo LiuVéronique Decroocq

The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis

Nov 23, 2019·Horticulture Research·Fengchao JiangYuzhu Wang

Translatome Profiling of Plum Pox Virus-Infected Leaves in European Plum Reveals Temporal and Spatial Coordination of Defense Responses in Phloem Tissues

Jul 28, 2019·Molecular Plant-microbe Interactions : MPMI·Tamara D CollumJames N Culver

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

Sep 19, 2019·The Plant Journal : for Cell and Molecular Biology·Tyler AliotoPere Arús

Analysis of the Rdr1 gene family in different Rosaceae genomes reveals an origin of an R-gene cluster after the split of Rubeae within the Rosoideae subfamily

Jan 24, 2020·PloS One·Ina MenzThomas Debener

Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

Dec 28, 2019·Genes·Sunil Kumar SahuHuan Liu

Mutant analysis in the nonlegume Parasponia andersonii identifies NIN and NF-YA1 transcription factors as a core genetic network in nitrogen-fixing nodule symbioses

Dec 22, 2019·The New Phytologist·Fengjiao BuRene Geurts

Functional Analysis Reveals the Regulatory Role of PpTST1 Encoding Tonoplast Sugar Transporter in Sugar Accumulation of Peach Fruit

Feb 13, 2020·International Journal of Molecular Sciences·Qian PengYuepeng Han

A High Resolution Melting Analysis-Based Genotyping Toolkit for the Peach (Prunus persica ) Chilling Requirement

Feb 28, 2020·International Journal of Molecular Sciences·Lin ChouFu-Chiun Hsu

Molecular karyotypes of loquat (Eriobotrya japonica ) aneuploids can be detected by using SSR markers combined with quantitative PCR irrespective of heterozygosity

Mar 4, 2020·Plant Methods·Guo WenGuolu Liang

Adaptation of hydroxymethylbutenyl diphosphate reductase enables volatile isoprenoid production

Mar 13, 2020·ELife·Mareike BongersClaudia E Vickers

Identification of early fruit development reference genes in plum

Apr 18, 2020·PloS One·Kelsey D GalimbaAnn M Callahan

Gene Expression Analysis of Plum pox virus (Sharka) Susceptibility/Resistance in Apricot (Prunus armeniaca L.)

Dec 15, 2015·PloS One·Manuel RubioPedro Martínez-Gómez

Primitive Genepools of Asian Pears and Their Complex Hybrid Origins Inferred from Fluorescent Sequence-Specific Amplification Polymorphism (SSAP) Markers Based on LTR Retrotransposons

Feb 13, 2016·PloS One·Shuang JiangYuanwen Teng

Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus

May 21, 2015·PloS One·Bruno AguiarCristina P Vieira

High-density multi-population consensus genetic linkage map for peach

Nov 22, 2018·PloS One·Cassia da Silva LingeKsenija Gasic

Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants

May 20, 2020·Scientific Reports·Ryan W ChristianAmit Dhingra

Developmental Mechanisms of Fleshy Fruit Diversity in Rosaceae

May 23, 2020·Annual Review of Plant Biology·Zhongchi LiuLei Guo

A pentaploid-based linkage map of the ancestral octoploid strawberry Fragaria virginiana reveals instances of sporadic hyper-recombination

May 16, 2020·Horticulture Research·Thomas M DavisDaniel C Frailey

Rascaf: Improving Genome Assembly with RNA Sequencing Data

Dec 2, 2016·The Plant Genome·Li SongLiliana Florea

Genome-wide analysis of the WRKY gene family and their positive responses to phytoplasma invasion in Chinese jujube

Jun 9, 2019·BMC Genomics·Chaoling XueJin Zhao

Viroid pathogenesis: a critical appraisal of the role of RNA silencing in triggering the initial molecular lesion

May 8, 2020·FEMS Microbiology Reviews·Ricardo FloresFrancesco Di Serio

Improved Reference Genome for Cyclotella cryptica CCMP332, a Model for Cell Wall Morphogenesis, Salinity Adaptation, and Lipid Production in Diatoms (Bacillariophyta)

Jul 28, 2020·G3 : Genes - Genomes - Genetics·Wade R RobertsAndrew J Alverson

Genomic analyses of diverse wild and cultivated accessions provide insights into the evolutionary history of jujube

Sep 19, 2020·Plant Biotechnology Journal·Mingxin GuoXusheng Zhao

Genome survey of pistachio (Pistacia vera L.) by next generation sequencing: Development of novel SSR markers and genetic diversity in Pistacia species

Dec 8, 2016·BMC Genomics·Elmira Ziya MotalebipourHatice Gözel

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics

Feb 12, 2017·The New Phytologist·Shu-Dong ZhangTingshuang Yi

The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

Mar 13, 2017·BMC Genomics·Ignazio VerdeJeremy Schmutz

Two Highly Similar Poplar Paleo-subgenomes Suggest an Autotetraploid Ancestor of Salicaceae Plants

Apr 28, 2017·Frontiers in Plant Science·Yinzhe LiuXiyin Wang

A New Insight into the Evolution and Functional Divergence of SWEET Transporters in Chinese White Pear (Pyrus bretschneideri)

Mar 25, 2017·Plant & Cell Physiology·Jiaming LiJun Wu

Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics

Apr 4, 2017·GigaScience·Yuling LinZhongxiong Lai

Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae

Jun 7, 2017·PeerJ·Yunpeng CaoYongping Cai

Comparison of Laboratory-Developed and Commercial Monoclonal Antibody-Based Sandwich Enzyme-Linked Immunosorbent Assays for Almond (Prunus dulcis) Detection and Quantification

Sep 5, 2017·Journal of Food Science·Changqi LiuShridhar K Sathe

TGTT and AACA: two transcriptionally active LTR retrotransposon subfamilies with a specific LTR structure and horizontal transfer in four Rosaceae species

Nov 3, 2017·Mobile DNA·Hao YinShaoling Zhang

PeachVar-DB: A Curated Collection of Genetic Variations for the Interactive Analysis of Peach Genome Data

Dec 8, 2017·Plant & Cell Physiology·Marco CirilliGiovanni Chillemi

Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)

Nov 5, 2017·BMC Plant Biology·Marco CirilliDaniele Bassi

Oak genome reveals facets of long lifespan

Jun 20, 2018·Nature Plants·Christophe PlomionJérôme Salse

Molecular Characterization, Evolution, and Expression Profiling of the Dirigent (DIR ) Family Genes in Chinese White Pear (Pyrus bretschneideri )

May 2, 2018·Frontiers in Genetics·Xi ChengYi Lin

Diversification and independent domestication of Asian and European pears

Jun 13, 2018·Genome Biology·Jun WuShaoling Zhang

A new insight into the evolution and functional divergence of FRK genes in Pyrus bretschneideri

Aug 16, 2018·Royal Society Open Science·Yunpeng CaoYongping Cai

Trends in herbgenomics

Aug 22, 2018·Science China. Life Sciences·Tianyi XinJingyuan Song

The effect of auxin and strigolactone on ATP/ADP isopentenyltransferase expression and the regulation of apical dominance in peach

Sep 6, 2018·Plant Cell Reports·MinJi LiFuTian Peng

Genome-wide Identification, Classification, Molecular Evolution and Expression Analysis of Malate Dehydrogenases in Apple

Oct 26, 2018·International Journal of Molecular Sciences·Baiquan MaFengwang Ma

Unraveling the Roles of Regulatory Genes during Domestication of Cultivated Camellia : Evidence and Insights from Comparative and Evolutionary Genomics

Oct 13, 2018·Genes·Chao YanHengfu Yin

Genomic effects of population collapse in a critically endangered ironwood tree Ostrya rehderiana

Dec 23, 2018·Nature Communications·Yongzhi YangJianquan Liu

Genome-wide identification of the HKT genes in five Rosaceae species and expression analysis of HKT genes in response to salt-stress in Fragaria vesca

Nov 21, 2018·Genes & Genomics·Shichuang ZhangYan Zhong

Unbiased subgenome evolution following a recent whole-genome duplication in pear (Pyrus bretschneideri Rehd.)

Mar 12, 2019·Horticulture Research·Qionghou LiShaoling Zhang

Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus × domestica Borkh.) using the OpenArray® platform

Mar 12, 2019·Horticulture Research·David ChagnéNahla Bassil

Insight on Rosaceae Family with Genome Sequencing and Functional Genomics Perspective

Mar 27, 2019·BioMed Research International·Prabhakaran SoundararajanJung Sun Kim

Prunus genetics and applications after de novo genome sequencing: achievements and prospects

Apr 10, 2019·Horticulture Research·Maria José AranzanaPere Arús

Cercis : A Non-polyploid Genomic Relic Within the Generally Polyploid Legume Family

May 21, 2019·Frontiers in Plant Science·Jacob S StaiSteven B Cannon

Fruit Salad in the Lab: Comparing Botanical Species to Help Deciphering Fruit Primary Metabolism

Jul 30, 2019·Frontiers in Plant Science·Léa RochAnnick Moing

Detection and application of genome-wide variations in peach for association and genetic relationship analysis

Jan 1, 2020·BMC Genetics·Liping GuanLirong Wang

Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.)

Dec 10, 2019·GigaScience·Gareth LinsmithLuca Bianco

Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice

Feb 21, 2020·BMC Plant Biology·Xiang LiXiangdong Liu

Variation among S-locus haplotypes and among stylar RNases in almond

Jan 19, 2020·Scientific Reports·Shashi N GoonetillekeDiane E Mather

Genome-wide SNP identification in Prunus rootstocks germplasm collections using Genotyping-by-Sequencing: phylogenetic analysis, distribution of SNPs and prediction of their effect on gene function

Feb 1, 2020·Scientific Reports·Verónica GuajardoMaría Ángeles Moreno

The genome evolution and domestication of tropical fruit mango

Mar 8, 2020·Genome Biology·Peng WangYeyuan Chen

A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication

May 12, 2020·The Plant Journal : for Cell and Molecular Biology·Sara PinosioMichele Morgante

Genetic diversity, population structure, and relationships of apricot (Prunus ) based on restriction site-associated DNA sequencing

May 8, 2020·Horticulture Research·Wenwen LiKang Liao

Transcriptome Analysis of Genes Involved in Cold Hardiness of Peach Tree (Prunus persica ) Shoots during Cold Acclimation and Deacclimation

Jun 5, 2020·Genes·Duk Jun YuHee Jae Lee

Draft genome of the famous ornamental plant Paeonia suffruticosa

Jun 20, 2020·Ecology and Evolution·Shuzuo LvCanjun Zhang

Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing

Aug 22, 2020·Horticulture Research·Jiawei WangQingzhong Liu

Comparisons of Natural and Cultivated Populations of Corydalis yanhusuo Indicate Divergent Patterns of Genetic and Epigenetic Variation

Jul 29, 2020·Frontiers in Plant Science·Chen ChenChengxin Fu

Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq

Jul 6, 2014·Molecular Plant Pathology·Manuel RubioPedro Martínez-Gómez

Peach MYB7 activates transcription of the proanthocyanidin pathway gene encoding leucoanthocyanidin reductase, but not anthocyanidin reductase

Nov 19, 2015·Frontiers in Plant Science·Hui ZhouYuepeng Han

UFGT: The Key Enzyme Associated with the Petals Variegation in Japanese Apricot

Feb 23, 2017·Frontiers in Plant Science·Xinxin WuZhihong Gao

Application of Genomic Technologies to the Breeding of Trees

Nov 30, 2016·Frontiers in Genetics·María Luisa BadenesMaría J Rubio-Cabetas

Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication

Nov 20, 2016·Molecular Biology and Evolution·Yezi XiangHong Ma

Dual regulation of water retention and cell growth by a stress-associated protein (SAP) gene in Prunus

Mar 25, 2017·Scientific Reports·Alba LloretGabino Ríos

Integrated QTL detection for key breeding traits in multiple peach progenies

Jun 7, 2017·BMC Genomics·José R Hernández MoraMaria José Aranzana

Alteration of TAC1 expression in Prunus species leads to pleiotropic shoot phenotypes

May 8, 2018·Horticulture Research·Courtney A HollenderChris Dardick

Loss of a highly conserved sterile alpha motif domain gene (WEEP ) results in pendulous branch growth in peach trees

May 2, 2018·Proceedings of the National Academy of Sciences of the United States of America·Courtney A HollenderChris Dardick

Genomic and transcriptomic sequencing of Rosa hybrida provides microsatellite markers for breeding, flower trait improvement and taxonomy studies

Jun 17, 2018·BMC Plant Biology·Weicong QiZhao Zhang

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

Oct 26, 2018·Nucleic Acids Research·Sook JungDorrie Main

Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes

Jun 28, 2018·Functional & Integrative Genomics·Yunpeng CaoYongping Cai

Genome re-sequencing reveals the evolutionary history of peach fruit edibility

Dec 23, 2018·Nature Communications·Yang YuHua Xie

Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping

Jan 4, 2019·Horticulture Research·Tetyana N ZhebentyayevaChris Dardick

Transcriptome sequencing of Himalayan Raspberry (Rubus ellipticus ) and development of simple sequence repeat markers

Apr 5, 2019·3 Biotech·Samriti SharmaKrishan Kumar

Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant

Mar 27, 2019·Plant Biotechnology Journal·En-Hua XiaXiao-Chun Wan

Construction of a highly saturated linkage map in Japanese plum (Prunus salicina L.) using GBS for SNP marker calling

Dec 7, 2018·PloS One·Basilio CarrascoHerman Silva

Apple whole genome sequences: recent advances and new prospects

Apr 10, 2019·Horticulture Research·Cameron PeaceStijn Vanderzande

Comparison Between Flat and Round Peaches, Genomic Evidences of Heterozygosity Events

Jun 6, 2019·Frontiers in Plant Science·Qiuping TanDongsheng Gao

The architecture of intra-organism mutation rate variation in plants

Apr 10, 2019·PLoS Biology·Long WangDacheng Tian

Genome-Wide Identification and Analysis of High-Copy-Number LTR Retrotransposons in Asian Pears

Feb 20, 2019·Genes·Shuang JiangJun Luo

De novo assembly of a wild pear (Pyrus betuleafolia) genome

Aug 2, 2019·Plant Biotechnology Journal·Xingguang DongYufen Cao

Identification and comparative analysis of the CIPK gene family and characterization of the cold stress response in the woody plant Prunus mume

May 21, 2019·PeerJ·Ping LiQixiang Zhang

Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants

Feb 23, 2019·Genome Biology·Xin QiaoAndrew H Paterson

Genomic analysis reveals rich genetic variation and potential targets of selection during domestication of castor bean from perennial woody tree to annual semi-woody crop

Oct 24, 2019·Plant Direct·Wei XuAizhong Liu

Transcriptomic and metabolomic profiling provide novel insights into fruit development and flesh coloration in Prunus mira Koehne, a special wild peach species

Nov 4, 2019·BMC Plant Biology·Hong YingXiuli Zeng

Mutation of a bHLH transcription factor allowed almond domestication

Jun 15, 2019·Science·R Sánchez-PérezB Lindberg Møller

Genome wide identification and functional characterization of strawberry pectin methylesterases related to fruit softening

Jan 10, 2020·BMC Plant Biology·Cheng XueXu Chen

Characterization of the expression of the stress-responsive PpERS1 gene from peach and analysis of its promoter using transgenic tomato

Jan 1, 2016·Plant Biotechnology·Bao-Quan WangGuo-Huai Li

Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of 'Lito' Chromosome 1 and Analysis of Candidate Genes

Dec 24, 2019·Frontiers in Plant Science·Gloria De MoriFilippo Geuna

Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch

Dec 19, 2019·Frontiers in Plant Science·Tomás Carrasco-ValenzuelaClaudio Meneses

Development of a fast and efficient root transgenic system for functional genomics and genetic engineering in peach

Feb 20, 2020·Scientific Reports·Shengli XuBeibei Zheng

ycf1-ndhF genes, the most promising plastid genomic barcode, sheds light on phylogeny at low taxonomic levels in Prunus persica

Aug 17, 2020·Journal, Genetic Engineering & Biotechnology·Mohamed Hamdy Amar

Construction of a high-density SNP-based genetic map and identification of fruit-related QTLs and candidate genes in peach [Prunus persica (L.) Batsch

Sep 25, 2020·BMC Plant Biology·Pei ShiCaiping Zhao

Global Transcriptome Analysis Reveals Differences in Gene Expression Patterns Between Nonhyperhydric and Hyperhydric Peach Leaves

Nov 30, 2016·The Plant Genome·Yakup BakirTurgay Unver

In silico search, characterization and validation of new EST-SSR markers in the genus Prunus

Jul 9, 2016·BMC Research Notes·Karim SorkhehPedro Martínez-Gómez

The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees

Dec 23, 2016·PLoS Genetics·Jian HuangXingang Li

Transcriptome Analysis of Differentially Expressed Genes Induced by Low and High Potassium Levels Provides Insight into Fruit Sugar Metabolism of Pear

Jun 18, 2017·Frontiers in Plant Science·Changwei ShenYangchun Xu

Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies

Jun 7, 2017·BMC Genomics·Filippo BiscariniLaura Rossini

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids

Nov 12, 2017·Scientific Reports·Christopher A SaskiZ Jeffery Chen

Transcriptome reprogramming of resistant and susceptible peach genotypes during Xanthomonas arboricola pv. pruni early leaf infection

Apr 27, 2018·PloS One·Fabio GervasiIgnazio Verde

Systematic analysis and comparison of the PHD-Finger gene family in Chinese pear (Pyrus bretschneideri) and its role in fruit development

Apr 21, 2018·Functional & Integrative Genomics·Yunpeng CaoYongping Cai

The complete chloroplast genome sequence of strawberry (Fragaria  × ananassa Duch.) and comparison with related species of Rosaceae

Oct 19, 2017·PeerJ·Hui ChengLin Mi

Genome-Wide Analysis Suggests the Relaxed Purifying Selection Affect the Evolution of WOX Genes in Pyrus bretschneideri, Prunus persica, Prunus mume, and Fragaria vesca

Jul 1, 2017·Frontiers in Genetics·Yunpeng CaoYongping Cai

Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae Sülzer) reveal defence responses controlled by the Rm3 locus

Nov 30, 2018·BMC Genomics·Liang NiuGuohuai Li

Evaluation and Recommendations for Routine Genotyping Using Skim Whole Genome Re-sequencing in Canola

Dec 25, 2018·Frontiers in Plant Science·M Michelle MalmbergNoel O I Cogan

Identifying Genome-Wide Sequence Variations and Candidate Genes Implicated in Self-Incompatibility by Resequencing Fragaria viridis

Mar 2, 2019·International Journal of Molecular Sciences·Jianke DuYushan Qiao

Genome-wide identification, expression, and interaction analysis for ovate family proteins in peach

Apr 28, 2019·Molecular Biology Reports·Huifeng LiKun Ran

Herbgenomics: A stepping stone for research into herbal medicine

Mar 2, 2019·Science China. Life Sciences·Haoyu HuShilin Chen

Genome-wide identification, characterization and expression analysis of the HD-Zip gene family in the stem development of the woody plant Prunus mume

Aug 15, 2019·PeerJ·Lulu LiQixiang Zhang

De novo assembly of white poplar genome and genetic diversity of white poplar population in Irtysh River basin in China

Jan 21, 2019·Science China. Life Sciences·Yan-Jing LiuQing-Yin Zeng

Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Jan 23, 2019·BMC Plant Biology·Mariem OmraniJean-Marc Audergon

Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants

Oct 28, 2019·Genome Research·Dongqing ShiShaoling Zhang

The genome of jojoba (Simmondsia chinensis ): A taxonomically isolated species that directs wax ester accumulation in its seeds

Mar 21, 2020·Science Advances·Drew SturtevantLiang Guo

Genome sequences of horticultural plants: past, present, and future

Oct 25, 2019·Horticulture Research·Fei ChenLiangsheng Zhang

A Chinese White Pear (Pyrus bretschneideri ) BZR Gene PbBZR1 Act as a Transcriptional Repressor of Lignin Biosynthetic Genes in Fruits

Aug 9, 2020·Frontiers in Plant Science·Yunpeng CaoLan Jiang

Resynthesis: Marker-Based Partial Reconstruction of Elite Genotypes in Clonally-Reproducing Plant Species

Aug 28, 2020·Frontiers in Plant Science·Iban EduardoPere Arús

Exploitation of Hi-C sequencing for improvement of genome assembly and in-vitro validation of differentially expressing genes in Jatropha curcas L

Feb 25, 2020·3 Biotech·Saakshi JalaliSavarimuthu Arockiasamy

Recommendations for Choosing the Genotyping Method and Best Practices for Quality Control in Crop Genome-Wide Association Studies

Jun 27, 2020·Frontiers in Genetics·Stefano PavanNunzio D'Agostino

EpiHRMAssay, in tube and in silico combined approach for the scanning and epityping of heterogeneous DNA methylation

Jan 25, 2017·Biology Methods and Protocols·Marco CirilliRosario Muleo

Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds

Aug 22, 2020·Horticulture Research·Hong ZhuZongrang Liu

Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

Oct 27, 2015·BMC Plant Biology·Jill M BushakraChristopher A Saski

Plant Lineage-Specific Amplification of Transcription Factor Binding Motifs by Miniature Inverted-Repeat Transposable Elements (MITEs)

Apr 17, 2018·Genome Biology and Evolution·Jordi MorataJosep M Casacuberta

Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes

May 29, 2018·Molecular Genetics and Genomics : MGG·Kaifeng MaJia Wang

Genome-Wide Identification, Expression Patterns, and Functional Analysis of UDP Glycosyltransferase Family in Peach (Prunus persica L. Batsch)

Apr 7, 2017·Frontiers in Plant Science·Boping WuKunsong Chen

Genotyping by Sequencing for SNP-Based Linkage Analysis and Identification of QTLs Linked to Fruit Quality Traits in Japanese Plum (Prunus salicina Lindl.)

Apr 27, 2017·Frontiers in Plant Science·Juan A SalazarRodrigo Infante

Ma Orthologous Genes in Prunus spp. Shed Light on a Noteworthy NBS-LRR Cluster Conferring Differential Resistance to Root-Knot Nematodes

Sep 27, 2018·Frontiers in Plant Science·Cyril Van GhelderHenri Duval

A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm

Mar 23, 2019·Scientific Reports·Lichun CaiAmy Iezzoni

Sequencing a Juglans regia  × J. microcarpa hybrid yields high-quality genome assemblies of parental species

Apr 3, 2019·Horticulture Research·Tingting ZhuMing-Cheng Luo

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns

Mar 8, 2020·BMC Plant Biology·Mao-Song PeiShao-Ling Zhang

Genome-wide analysis of the NF-Y gene family in peach (Prunus persica L.)

Jul 28, 2019·BMC Genomics·Miao LiAnning Zhang

Application of an antibody chip for screening differentially expressed proteins during peach ripening and identification of a metabolon in the SAM cycle to generate a peach ethylene biosynthesis model

Mar 21, 2020·Horticulture Research·Wenfang ZengZhiqiang Wang

Stone Fruit as Biofactories of Phytochemicals With Potential Roles in Human Nutrition and Health

Sep 29, 2020·Frontiers in Plant Science·María Valeria LaraMaría Fabiana Drincovich

Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes

Jan 1, 2014·Horticulture Research·Merianne AlkioMoritz Knoche

Understanding development and ripening of fruit crops in an 'omics' era

Jan 1, 2014·Horticulture Research·Nigel E GapperChristopher B Watkins

Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Sep 6, 2018·Genome Biology·Seunghoon BaekJeong-Hwan Mun

Genomic analyses of an extensive collection of wild and cultivated accessions provide new insights into peach breeding history

Feb 23, 2019·Genome Biology·Yong LiLirong Wang

Genome-wide identification and transcriptome profiling reveal that E3 ubiquitin ligase genes relevant to ethylene, auxin and abscisic acid are differentially expressed in the fruits of melting flesh and stony hard peach varieties

Nov 23, 2019·BMC Genomics·Bin TanJiancan Feng

Association between blooming time and climatic adaptation in Prunus mume

Jan 29, 2020·Ecology and Evolution·Ting ShiZhihong Gao

Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach

Mar 18, 2020·Frontiers in Plant Science·Jiali YuMargaret E Staton

High-density genetic map construction and quantitative trait loci analysis of the stony hard phenotype in peach based on restriction-site associated DNA sequencing

Aug 16, 2018·BMC Genomics·Shaolei GuoZhihong Gao

A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding

Aug 10, 2020·G3 : Genes - Genomes - Genetics·Jason D ZurnNahla Bassil

The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress

Oct 2, 2020·Plant, Cell & Environment·Liangsheng ZhangFei Chen

The genome of Chinese flowering cherry (Cerasus serrulata ) provides new insights into Cerasus species

Oct 22, 2020·Horticulture Research·Xian-Gui YiXian-Rong Wang

Depicting the battle between nectarine and Monilinia laxa : the fruit developmental stage dictates the effectiveness of the host defenses and the pathogen's infection strategies

Oct 22, 2020·Horticulture Research·Marta Balsells-LlauradóRosario Torres

A candidate PpRPH gene of the D locus controlling fruit acidity in peach

Nov 1, 2020·Plant Molecular Biology·Lu WangYuepeng Han

Chromosome-Level Genome Assembly of Cerasus humilis Using PacBio and Hi-C Technologies

Nov 3, 2020·Frontiers in Genetics·Pengfei WangJunjie Du

Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry.

Sep 18, 2020·Molecular Biology and Evolution·Chao FengMing Kang

Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality

Oct 18, 2020·G3 : Genes - Genomes - Genetics·Mariem NsibiJean-Luc Regnard

Chromosome-level draft genome of a diploid plum (Prunus salicina)

Dec 11, 2020·GigaScience·Chaoyang LiuYehua He

The Peptide PbrPSK2 From Phytosulfokine Family Induces Reactive Oxygen Species (ROS) Production to Regulate Pear Pollen Tube Growth

Dec 18, 2020·Frontiers in Plant Science·Xiaobing KouJuyou Wu

Up-regulation of phenylpropanoid biosynthesis system in peach species by peach aphids produces anthocyanins that protect the aphids against UVB and UVC radiation

Oct 21, 2020·Tree Physiology·Wei ZhouShihong Luo

Chromosome-level reference genome assembly provides insights into aroma biosynthesis in passion fruit (Passiflora edulis)

Dec 17, 2020·Molecular Ecology Resources·Dongna MaXingtan Zhang

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

Dec 30, 2020·Genome Biology·José A CampoyKorbinian Schneeberger

Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica)

Jan 2, 2021·Horticulture Research·Ann M CallahanChristopher D Dardick

Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis.

Jan 17, 2021·Nature Communications·Amit RaiMami Yamazaki

Related Concepts

Polyol
1-phenylpropanol
Genome Mapping
Biological Evolution
Polymers
Variation (Genetics)
Genome, Plant
Propanols
Prunus
Chromosomes, Plant

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