The highly conserved spermatophyte cell wall DUF642 protein family: phylogeny and first evidence of interaction with cell wall polysaccharides in vitro

Molecular Phylogenetics and Evolution
Alejandra Vázquez-LoboElisabeth Jamet

Abstract

The evolution of spermatophyte plants involved fundamental changes in cell wall structure and function which resulted from diversification of carbohydrates and proteins. Cell wall proteomic analyses identified a novel family of proteins of yet unknown function, the DUF642 (Domain of Unknown Function 642) proteins. To investigate the evolution of the DUF642 gene family, 154 gene sequences from 24 plant species were analyzed, and phylogenetic inferences were conducted using the Maximum Likelihood and Bayesian Inference methods. Orthologous genes were detected in spermatophyte species and absent in non-seed known plant genomes. Protein sequences shared conserved motifs that defined the signature of the family. Distribution of conserved motifs indicated an ancestral intragenic duplication event. Gene phylogeny documented paleoduplication events originating three or four clades, depending on root position. When based on mid-point rooting, it retrieved four monophyletic clades: A, B, C, and D. A glycosylphosphatidylinositol (GPI)-anchor site and one or two galactose-binding domains-like (GBDLs) could be predicted for some DUF642 proteins. The B, C, and D clades grouped the predicted GPI-anchored proteins. First evidence of in vitro i...Continue Reading

References

Feb 1, 1995·Plant Molecular Biology·S AbrahamsJ M Watson
Apr 26, 2000·Proceedings of the National Academy of Sciences of the United States of America·L E GrahamJ S Busse
Jun 25, 2002·Journal of Molecular Biology·Alisdair B BorastonGideon J Davies
Jul 3, 2003·The Plant Cell·Mikihiro OgawaShinjiro Yamaguchi
Aug 13, 2003·Bioinformatics·Fredrik Ronquist, John P Huelsenbeck
Jun 25, 2004·The Biochemical Journal·Alisdair B BorastonGideon J Davies
Dec 17, 2005·Trends in Plant Science·Elisabeth JametRafael F Pont-Lezica
Apr 19, 2006·Proceedings of the National Academy of Sciences of the United States of America·Tom P J DunkleyKathryn S Lilley
Feb 3, 2007·The Plant Journal : for Cell and Molecular Biology·Amit LevyBernard L Epel
Jan 4, 2008·Journal of Plant Physiology·Alfredo Simone NegriLuca Espen
Jan 23, 2008·Proteomics·Elisabeth JametRafael Pont-Lezica
Apr 26, 2008·PLoS Computational Biology·Martin C FrithTimothy L Bailey
Nov 29, 2008·Journal of Plant Physiology·Xiong-Yan ChenJae-Yean Kim
Jan 2, 2009·Plant Physiology·Stephen DepuydtDanny Vereecke
Aug 19, 2009·Journal of Experimental Botany·Purbasha SarkarManfred Auer
Nov 21, 2009·Plant Physiology·Bryan W PenningNicholas C Carpita
Nov 9, 2010·BMC Evolutionary Biology·Luiz Eduardo V Del Bem, Michel G A Vincentz
Dec 15, 2010·The Plant Journal : for Cell and Molecular Biology·Lior Rubinovich, David Weiss
Feb 15, 2011·Journal of Experimental Botany·Eleanor MarshallJose Gutierrez-Marcos
Mar 1, 2011·Annual Review of Plant Biology·Zoë A PopperDagmar B Stengel

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Citations

Jan 18, 2014·Proteomics·Maria Juliana Calderan-RodriguesCarlos Alberto Labate
Dec 18, 2014·Astrobiology·Robert J FerlAnna-Lisa Paul
Sep 15, 2012·Annals of Botany·Luz Elena Garza-CaligarisAlicia Gamboa-Debuen
Oct 24, 2013·Journal of Experimental Botany·Juan David RejónAntonio Jesús Castro
Apr 1, 2014·Plant & Cell Physiology·Ritesh MewalalAlexander A Myburg
Aug 23, 2019·Biology·Kjell SergeantJean-Francois Hausman
Jul 10, 2019·International Journal of Molecular Sciences·José Erik Cruz-ValderramaAlicia Gamboa-deBuen
Jan 8, 2020·International Journal of Molecular Sciences·Mehdi CherkaouiMathilde Francin-Allami
Apr 17, 2014·Proteomes·Cécile AlbenneElisabeth Jamet
Nov 2, 2017·Frontiers in Plant Science·Harold DurufléElisabeth Jamet
Feb 20, 2019·Frontiers in Plant Science·Anna Maria SalzanoAndrea Scaloni
Apr 26, 2019·International Journal of Molecular Sciences·Maria Juliana Calderan-RodriguesCarlos Alberto Labate
Apr 25, 2020·International Journal of Molecular Sciences·Elisabeth Jamet, Christophe Dunand
Dec 15, 2017·The Plant Pathology Journal·Alexis Salazar-IribeAlicia Gamboa-deBuen

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