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The In Silico Genotyper (ISG): an open-source pipeline to rapidly identify and annotate nucleotide variants for comparative genomics applications

bioRxiv

Feb 20, 2015

Jason W. SahlTalima R Pearson

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Abstract

The identification and annotation of nucleotide variants, including insertions/deletions and single nucleotide polymorphisms (SNPs), from whole genome sequence data is important for studies of bacterial evolution, comparative genomics, and phylogeography. The in silico Genotyper (ISG) r...read more

Mentioned in this Paper

Genome, Bacterial
Study
Single Nucleotide Polymorphism
BWA 4C
Genome
R Programming Language
Comparative Genomic Analysis
ISG Consent Type
Gene Deletion
Biological Evolution
14
8
Paper Details
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  • The In Silico Genotyper (ISG): an open-source pipeline to rapidly identify and annotate nucleotide variants for comparative genomics applications

    bioRxiv

    Feb 20, 2015

    Jason W. SahlTalima R Pearson

    PMID: 990015578

    DOI: 10.1101/015578

    Abstract

    The identification and annotation of nucleotide variants, including insertions/deletions and single nucleotide polymorphisms (SNPs), from whole genome sequence data is important for studies of bacterial evolution, comparative genomics, and phylogeography. The in silico Genotyper (ISG) r...read more

    Mentioned in this Paper

    Genome, Bacterial
    Study
    Single Nucleotide Polymorphism
    BWA 4C
    Genome
    14
    8
    Paper Details
    References
    • References
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