The InterPro database and tools for protein domain analysis

Current Protocols in Bioinformatics
N Mulder, R Apweiler

Abstract

InterPro provides a one-stop shop for protein-sequence classification, freeing the user from having to visit multiple databases separately and rationalize the different results in varying formats. This unit describes how to submit a sequence to InterProScan via a Web server. It also provides instructions for installing and running InterProScan locally. In addition, details on browsing InterPro families and domains of interest using the InterPro Web and sequence retrieval system (SRS) are provided to show users how to get the most from the resource.

References

Jan 27, 1999·Bioinformatics·S R Eddy
Mar 8, 2000·Bioinformatics·P ScordisT K Attwood
Mar 10, 2001·Nature·E S LanderUNKNOWN International Human Genome Sequencing Consortium
Feb 16, 2002·Bioinformatics·A KanapinE Zdobnov
Aug 15, 2002·Bioinformatics·Evgeny M ZdobnovThure Etzold
Sep 17, 2002·Briefings in Bioinformatics·Margaret BiswasRolf Apweiler
Jan 10, 2003·Nucleic Acids Research·T K AttwoodC Zygouri
Dec 19, 2003·Nucleic Acids Research·Cathy H WuWinona C Barker
Dec 19, 2003·Nucleic Acids Research·Antonina AndreevaAlexey G Murzin
Dec 21, 2004·Nucleic Acids Research·Catherine BruDaniel Kahn
Dec 21, 2004·Nucleic Acids Research·Paul KerseyRolf Apweiler
Jun 28, 2005·Nucleic Acids Research·E QuevillonR Lopez
Dec 31, 2005·Nucleic Acids Research·Nicolas HuloChristian J A Sigrist
Dec 31, 2005·Nucleic Acids Research·Robert D FinnAlex Bateman
Dec 31, 2005·Nucleic Acids Research·Ivica LetunicPeer Bork
Dec 31, 2005·Nucleic Acids Research·Corin YeatsChristine A Orengo
Dec 31, 2005·Nucleic Acids Research·Andrei KouranovHelen M Berman
Dec 31, 2005·Nucleic Acids Research·Jürgen Kopp, Torsten Schwede
Dec 31, 2005·Nucleic Acids Research·UNKNOWN Gene Ontology Consortium
Nov 14, 2006·Nucleic Acids Research·Derek WilsonJulian Gough
Dec 5, 2006·Nucleic Acids Research·UNKNOWN UniProt Consortium
Jan 5, 2007·Nucleic Acids Research·Nicola J MulderCorin Yeats

❮ Previous
Next ❯

Citations

Nov 28, 2008·Journal of Structural and Functional Genomics·Konstantin ArnoldTorsten Schwede
Oct 22, 2008·Nucleic Acids Research·Florian KieferTorsten Schwede
Nov 6, 2008·Nucleic Acids Research·Vincent NavratilChantal Rabourdin-Combe
Mar 27, 2010·Nucleic Acids Research·Wojciech M KarlowskiRichard Cooke
Mar 9, 2010·Plant & Cell Physiology·Keiichi Mochida, Kazuo Shinozaki
Oct 28, 2008·BMC Genomics·Stéphane Descorps-DeclèreBernard Labedan
Dec 6, 2008·BMC Genomics·Manisha GaurRajendra Prasad
Feb 14, 2014·PloS One·Ashutosh K PandeyRobert W Williams
Dec 31, 2016·Neurological Research·Jing WangYing-Hai Jiang
Aug 14, 2020·The Plant Pathology Journal·Taehyun KimJunhyun Jeon

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

© 2022 Meta ULC. All rights reserved