The mouse atlas and graphical gene-expression database

Seminars in Cell & Developmental Biology
Duncan DavidsonRichard A Baldock

Abstract

The large amounts of gene-expression data on mouse development are now too extensive to be stored in any format other than that of a database. Furthermore, as this data is intrinsically graphical and as, in the early developmental stages at least, its boundaries do not map directly to those of anatomical tissues, the natural way to store it is in graphical format. We are therefore constructing a database able to handle such graphical gene-expression data by mapping it onto 3-D reconstructions of mouse embryos whose tissues have been delineated. This article reviews the progress that has been made in this project and describes its two major components, CD-ROMs of the 3-D reconstructions to be held on the user's computer and a gene-expression database that will be maintained at a host site, the two being linked over the internet by a complex Java-based interface for submitting data and querying the database.Copyright 1997 Academic Press Limited Copyright 1997Academic Press Limited

Citations

Oct 22, 1998·Journal of Interferon & Cytokine Research : the Official Journal of the International Society for Interferon and Cytokine Research·J M Sorace, K Canfield
May 14, 2005·Bioinformatics·Konstantinos A KarasavvasAlbert Burger
Jul 1, 2008·Bioinformatics·Kenneth McLeod, Albert Burger
Dec 10, 1998·Nucleic Acids Research·M RingwaldJ E Richardson
Oct 14, 2009·Nucleic Acids Research·Bouke A de BoerAntoon F M Moorman
Aug 28, 2007·International Journal of Nanomedicine·Andrei L Turinsky, Christoph W Sensen
Jul 26, 2015·Mammalian Genome : Official Journal of the International Mammalian Genome Society·Terry F HayamizuMartin Ringwald
Sep 29, 2015·Journal of Biomedical Semantics·Pierre-Yves RabattuOlivier Palombi
Jan 22, 2000·Developmental Biology·R M BruneR A Baldock
Mar 11, 2005·BMC Bioinformatics·Guangjie FengRichard Baldock
Nov 30, 2004·BMC Bioinformatics·Albert BurgerRichard Baldock
Jun 16, 2004·Journal of Biomedical Informatics·K A KarasavvasA Burger
Jun 16, 2010·Systematic Biology·Wasila M DahdulPaula M Mabee
Sep 29, 1998·Genome Research·J B BardD R Davidson
Mar 24, 2000·Trends in Genetics : TIG·M RingwaldJ E Richardson

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