The neXtProt peptide uniqueness checker: a tool for the proteomics community

Bioinformatics
Mathieu SchaefferLydie Lane

Abstract

The neXtProt peptide uniqueness checker allows scientists to define which peptides can be used to validate the existence of human proteins, i.e. map uniquely versus multiply to human protein sequences taking into account isobaric substitutions, alternative splicing and single amino acid variants. The pepx program is available at https://github.com/calipho-sib/pepx and can be launched from the command line or through a cgi web interface. Indexing requires a sequence file in FASTA format. The peptide uniqueness checker tool is freely available on the web at https://www.nextprot.org/tools/peptide-uniqueness-checker and from the neXtProt API at https://api.nextprot.org/. lydie.lane@sib.swiss.

References

Nov 5, 2016·Journal of Proteome Research·Yves VandenbrouckCharles Pineau
Nov 5, 2016·Journal of Proteome Research·Eric W DeutschGilbert S Omenn
Dec 3, 2016·Nucleic Acids Research·Pascale GaudetAmos Bairoch

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Citations

Oct 19, 2017·Expert Review of Proteomics·Young-Ki PaikChristopher M Overall
Jan 9, 2020·Journal of the Royal Society, Interface·Axel PetzoldSonia O'Connor
Feb 26, 2020·Expert Review of Proteomics·Monique Zahn-Zabal, Lydie Lane
Sep 2, 2020·Amyloid : the International Journal of Experimental and Clinical Investigation : the Official Journal of the International Society of Amyloidosis·Jessica R ChapmanAhmet Dogan
Jul 28, 2020·Nature Communications·Léo AubertPhilippe P Roux
Nov 15, 2019·Nucleic Acids Research·Monique Zahn-ZabalLydie Lane
Oct 18, 2020·Nature Communications·Subash AdhikariMark S Baker
Aug 31, 2017·Journal of Proteome Research·Gilbert S OmennEric W Deutsch
Sep 12, 2017·Journal of Proteome Research·Christine CarapitoCharles Pineau
Sep 30, 2017·Journal of Proteome Research·Siqi LiYan Ren
Sep 30, 2017·Journal of Proteome Research·Elizabeth GuruceagaVictor Segura
Oct 6, 2017·Journal of Proteome Research·Amr ElguoshyUNKNOWN Chromosome X Project Team of JProS
Oct 9, 2019·Journal of Proteome Research·Zhilong LinYan Ren
Oct 11, 2019·Journal of Proteome Research·Eric W DeutschGilbert S Omenn
Sep 20, 2018·Journal of Proteome Research·Luis MendozaRobert L Moritz
Oct 27, 2018·Journal of Proteome Research·Yuanliang ZhangYan Ren
Aug 15, 2018·Journal of Proteome Research·Charlotte MacronLoïc Dayon
Aug 22, 2018·Journal of Proteome Research·Nathalie MelaineCharles Pineau
Oct 14, 2021·Database : the Journal of Biological Databases and Curation·Dan ShaoJuan Cui
Oct 22, 2021·Journal of Proteome Research·Eric W DeutschJochen M Schwenk

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