The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

Nature Communications
Shou-Fu DuanFeng-Yan Bai

Abstract

The yeast Saccharomyces cerevisiae has been an essential component of human civilization because of its long global history of use in food and beverage fermentation. However, the diversity and evolutionary history of the domesticated populations of the yeast remain elusive. We show here that China/Far East Asia is likely the center of origin of the domesticated populations of the species. The domesticated populations form two major groups associated with solid- and liquid-state fermentation and appear to have originated from heterozygous ancestors, which were likely formed by outcrossing between diverse wild isolates primitively for adaptation to maltose-rich niches. We found consistent gene expansion and contraction in the whole domesticated population, as well as lineage-specific genome variations leading to adaptation to different environments. We show a nearly panoramic view of the diversity and life history of S. cerevisiae and provide new insights into the origin and evolution of the species.

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Citations

Feb 26, 2019·Letters in Applied Microbiology·J F Garcia-MazcorroJ R Kawas
Jun 5, 2019·Proceedings of the National Academy of Sciences of the United States of America·Li LiuTian'en Zhang
Jun 15, 2019·Yeast·Ciaran Gilchrist, Rike Stelkens
Aug 1, 2019·Genome Biology and Evolution·Yu-Tian TaoLi-Lin Du
May 22, 2019·Environmental Microbiology·Cene GostinčarNina Gunde-Cimerman
Dec 10, 2019·FEMS Yeast Research·Masako TakashimaTakashi Sugita
Feb 23, 2020·PLoS Genetics·Wioletta CzajaCasey M Bergman
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Mar 24, 2020·Journal of the Science of Food and Agriculture·Anbessa D KorichaFeng-Yan Bai
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Feb 28, 2019·Frontiers in Genetics·Miguel MorardEladio Barrio
Jan 16, 2019·Yeast·Cécile FairheadJoseph Schacherer
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Sep 26, 2019·Frontiers in Microbiology·Cene GostinčarZewei Song
Nov 18, 2020·Environmental Microbiology·Angela CiriglianoTeresa Rinaldi
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Jan 9, 2021·FEMS Yeast Research·Sheila Tiemi NagamatsuMarcelo Falsarella Carazzolle
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Jul 11, 2020·Journal of Bioscience and Bioengineering·Hitoshi ShimoiMiwa Yamada

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Datasets Mentioned

BETA
PRJNA396809

Methods Mentioned

BETA
flow cytometry
environmental stress
Bioscreen
PCR
FACS

Software Mentioned

∂a∂i
GCTA
custom Perl scripts
GATK
BLAST search
Genome Analysis Toolkit ( GATK
house
Variscan
SAMTools
Velvet

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