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The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

bioRxiv

Jul 26, 2018

Yang LiaoWei Shi

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Abstract

The first steps in the analysis of RNA sequencing (RNA-seq) data are usually to map the reads to a reference genome and then to count reads by gene, by exon or by exon-exon junction. These two steps are at once the most common and also typically the most expensive computational steps in...read more

Mentioned in this Paper

Genetic Analysis
Computer Software
Simulation
Genome
RNA
Memory
Software Tools
Genes
Computer Program Package
Nucleic Acid Sequencing
104
47
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  • The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

    bioRxiv

    Jul 26, 2018

    Yang LiaoWei Shi

    DOI: 10.1101/377762

    Abstract

    The first steps in the analysis of RNA sequencing (RNA-seq) data are usually to map the reads to a reference genome and then to count reads by gene, by exon or by exon-exon junction. These two steps are at once the most common and also typically the most expensive computational steps in...read more

    Mentioned in this Paper

    Genetic Analysis
    Computer Software
    Simulation
    Genome
    RNA
    104
    47

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