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The Scramble Conversion Tool

bioRxiv

Mar 28, 2014

James K Bonfield

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Abstract

Motivation: The reference CRAM file format implementation is in Java. We present "Scramble": a new C implementation of SAM, BAM and CRAM file I/O. Results: The C API for CRAM is 1.5-1.7x slower than BAM at decoding, but 1.8-2.6x faster at encoding. We see file size savings of 40-50%. Av...read more

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CCRL2 gene
Motivation
Software Tools
CCRL2 protein, human
Systolic Anterior Movement of Mitral Valve
c new
Active ingredient
DPYSL5 gene
16
Paper Details
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  • The Scramble Conversion Tool

    bioRxiv

    Mar 28, 2014

    James K Bonfield

    PMID: 990003640

    DOI: 10.1101/003640

    Abstract

    Motivation: The reference CRAM file format implementation is in Java. We present "Scramble": a new C implementation of SAM, BAM and CRAM file I/O. Results: The C API for CRAM is 1.5-1.7x slower than BAM at decoding, but 1.8-2.6x faster at encoding. We see file size savings of 40-50%. Av...read more

    Mentioned in this Paper

    CCRL2 gene
    Motivation
    Software Tools
    CCRL2 protein, human
    Systolic Anterior Movement of Mitral Valve
    16
    Paper Details
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