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The Scramble Conversion Tool

bioRxiv

Mar 28, 2014

James K Bonfield

Abstract

Motivation The reference CRAM file format implementation is in Java. We present “Scramble”: a new C implementation of SAM, BAM and CRAM file I/O. Results The C API for CRAM is 1.5–1.7x slower than BAM at decoding, but 1.8–2.6x faster at encoding. We see file size savings of 40–50%. Av...read more

Mentioned in this Paper

DPYSL5 gene
CCRL2 protein, human
Systolic Anterior Movement of Mitral Valve
Motivation
Software Tools
c new
CCRL2
DPYSL5
IS1
CCRL2 gene
16
Paper Details
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The Scramble Conversion Tool

bioRxiv

Mar 28, 2014

James K Bonfield

PMID: 990003640

DOI: 10.1101/003640

Abstract

Motivation The reference CRAM file format implementation is in Java. We present “Scramble”: a new C implementation of SAM, BAM and CRAM file I/O. Results The C API for CRAM is 1.5–1.7x slower than BAM at decoding, but 1.8–2.6x faster at encoding. We see file size savings of 40–50%. Av...read more

Mentioned in this Paper

DPYSL5 gene
CCRL2 protein, human
Systolic Anterior Movement of Mitral Valve
Motivation
Software Tools
c new
CCRL2
DPYSL5
IS1
CCRL2 gene
16
Paper Details
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  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
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