The susceptibility of sea-island cotton recombinant inbred lines to Fusarium oxysporum f. sp. vasinfectum infection is characterized by altered expression of long noncoding RNAs

Scientific Reports
Zhengpei YaoYanying Qu

Abstract

Disease resistance is one of the most complicated yet important plant traits. The potential functions of long noncoding RNAs (lncRNAs) in response to pathogenic fungi remain unclear. In this study, we sequenced the transcriptomes of four different sea-island cotton (Gossypium barbadense) recombinant inbred lines (RILs) with susceptible, highly susceptible, highly resistant, or super highly resistant phenotypes and compared their responses to Fusarium oxysporum f. sp. vasinfectum (Fov) infection with those of their susceptible and resistant parents. Infection-induced protein coding genes were highly enriched in similar disease resistance-related pathways regardless of fungal susceptibility. In contrast, we found that the expression of a large number of Fov infection-induced lncRNAs was positively correlated with plant susceptibility. Bioinformatics analysis of potential target mRNAs of lncRNAs with both trans-acting and cis-acting mechanisms showed that mRNAs co-expressed or co-located with Fov-regulated lncRNAs were highly enriched in disease resistance-related pathways, including glutathione metabolism, glycolysis, plant hormone signal transduction, anthocyanin biosynthesis, and butanoate metabolism. Together these results sug...Continue Reading

References

Aug 30, 2000·Nature·Y ZhuC C Mundt
Jun 1, 1997·Annual Review of Plant Physiology and Plant Molecular Biology·Chris Lamb, Richard A. Dixon
Sep 21, 2004·Annual Review of Plant Biology·Klaus Apel, Heribert Hirt
Jul 18, 2006·Nucleic Acids Research·Jianmin WuLiping Wei
Jun 13, 2008·Nature Protocols·Thomas D Schmittgen, Kenneth J Livak
Jun 2, 2009·Frontiers in Bioscience (Scholar Edition)·Benjamin A Garcia
Jun 23, 2009·Genome Research·Martin KrzywinskiMarco A Marra
Jun 30, 2010·Nature Reviews. Genetics·Peter N Dodds, John P Rathjen
May 4, 2011·Journal of Integrative Plant Biology·Chuanfu An, Zhonglin Mou
Sep 20, 2011·Molecular Cell·Kevin C Wang, Howard Y Chang
Apr 5, 2012·Molecular Plant Pathology·Ralph DeanGary D Foster
Apr 14, 2012·Nature·Matthew C FisherSarah J Gurr
Nov 17, 2012·Trends in Genetics : TIG·Lesley A BoydHei Leung
Oct 10, 2013·Nature Reviews. Molecular Cell Biology·Sarah Geisler, Jeff Coller
Oct 15, 2013·The New Phytologist·Qian-Hao ZhuMing-Bo Wang
Sep 25, 2014·Annual Review of Genetics·Roberto Bonasio, Ramin Shiekhattar
Jan 24, 2015·Plant Biotechnology Journal·Jun LiuNam-Hai Chua
Jun 7, 2015·Annual Review of Phytopathology·David E CookBart P H J Thomma
Dec 17, 2015·Nature Reviews. Genetics·Jeffrey J Quinn, Howard Y Chang
Dec 10, 2016·Frontiers in Plant Science·Leonardo Galindo-González, Michael K Deyholos
May 4, 2017·The Plant Cell·Jennifer Mach

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Datasets Mentioned

BETA
GSE95288

Methods Mentioned

BETA
PCR
RNA-seq
electrophoresis

Software Mentioned

Coding Potential Calculator
Cytoscape
Cuffmerge
Cufflinks
BLASTN
Circos
TopHat2
edgeR
Cuffcompare
R

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