The Vienna RNA websuite.

Nucleic Acids Research
Andreas R GruberIvo L Hofacker

Abstract

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.

References

Jan 1, 1989·Methods in Enzymology·M Zuker
Mar 21, 1998·Proceedings of the National Academy of Sciences of the United States of America·J SantaLucia
Mar 9, 1999·Bioinformatics·D Evers, R Giegerich
Jun 25, 2002·Journal of Molecular Biology·Ivo L HofackerPeter F Stadler
Oct 9, 2002·Genome Research·Jason E StajichEwan Birney
Jun 26, 2003·Nucleic Acids Research·Ivo L Hofacker
Sep 23, 2003·BMC Bioinformatics·Robert J Klein, Sean R Eddy
Feb 1, 2006·Bioinformatics·Ulrike MücksteinIvo L Hofacker
Feb 3, 2006·Bioinformatics·Ivo L Hofacker, Peter F Stadler
May 26, 2006·Algorithms for Molecular Biology : AMB·Stephan H BernhartIvo L Hofacker
Apr 17, 2007·PLoS Computational Biology·Sebastian WillRolf Backofen
Jul 6, 2007·Journal of Mathematical Biology·Athanasius F BompfünewererSebastian Will
Jul 25, 2007·Bioinformatics·Mirela AndronescuKevin P Murphy
Aug 28, 2007·Bioinformatics·Yvan SaeysPedro Larrañaga

❮ Previous
Next ❯

Citations

Jan 14, 2010·Journal of Molecular Evolution·Francisco Miralles
Aug 20, 2010·Archives of Virology·S SabanadzovicR A Valverde
May 16, 2012·Functional & Integrative Genomics·Qingpo Liu
Mar 16, 2013·Journal of Industrial Microbiology & Biotechnology·Youran LiGuiyang Shi
Nov 13, 2012·Biotechnology Letters·Axel FreischmidtGudrun Horn-Katting
Feb 24, 2012·Journal of Biomolecular NMR·Arash BahramiHamid R Eghbalnia
May 6, 2010·Journal of Fluorescence·John G BrunoCarrie J Andrews
Jun 7, 2011·Journal of Fluorescence·John Gordon BrunoJonathan A Bohmann
Jan 6, 2012·Journal of Fluorescence·John G Bruno, Maria P Carrillo
Sep 28, 2013·Journal of Insect Physiology·Mercedes Rubio, Xavier Belles
Jan 13, 2010·International Journal of Obesity : Journal of the International Association for the Study of Obesity·M GarauletJ M Ordovas
Jul 28, 2013·Molecular Therapy : the Journal of the American Society of Gene Therapy·Kai HoehligSven Klussmann
Feb 19, 2013·Nature Immunology·Myeong Sup LeeYoung-Joon Kim
Aug 19, 2011·Nature Reviews. Genetics·Yue WanHoward Y Chang
Feb 24, 2009·Proceedings of the National Academy of Sciences of the United States of America·D R Yoder-HimesR Sorek
Jan 19, 2010·Proceedings of the National Academy of Sciences of the United States of America·Hyunsoo KimMark D Johnson
Feb 15, 2012·Proceedings of the National Academy of Sciences of the United States of America·George A PerdrizetTao Pan
Mar 3, 2012·Proceedings of the National Academy of Sciences of the United States of America·Elliott J MeerKelsey C Martin
Mar 22, 2012·Omics : a Journal of Integrative Biology·Antonio Muñoz-MéridaAntonio J Pérez-Pulido
Jan 3, 2012·Bioinformatics·S Sahoo, A A Albrecht
Feb 15, 2013·Genome Biology and Evolution·Yuanhui MaoShiheng Tao
Nov 28, 2009·Molecular Biology and Evolution·Vassilis DourisMichalis Averof
Dec 18, 2012·Molecular Biology and Evolution·Louis-Marie BobayMarie Touchon
Feb 2, 2012·Mutagenesis·Debora LandiStefano Landi
May 26, 2009·Nucleic Acids Research·Yaroslav Chushak, Morley O Stone
Jun 18, 2009·Nucleic Acids Research·Richard S P Horler, Carin K Vanderpool
Sep 26, 2009·Nucleic Acids Research·Floor FrederiksFred van Leeuwen
Feb 13, 2010·Nucleic Acids Research·Mathieu RederstorffAlexander Hüttenhofer
Nov 3, 2010·Nucleic Acids Research·Kate B CookTimothy R Hughes

❮ Previous
Next ❯

Methods Mentioned

BETA
interaction prediction

Software Mentioned

Perl
Apache
treekin
RNAmovies
Vienna
CLUSTAL W
RNAinverse
Vienna RNA package
RNAfold
RNAeval

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

Nucleic Acids Research
Paul P GardnerAlex Bateman
Journal of Computational Chemistry
Joseph N ZadehNiles A Pierce
© 2022 Meta ULC. All rights reserved