Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma

Oncotarget
Xiuhui ShiRenyi Qin

Abstract

Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their function, we constructed a global triple network based on the competitive endogenous RNA (ceRNA) theory and RNA-seq data from The Cancer Genome Atlas. Using 182 PAAD cases, we established a lncRNA-miRNA-mRNA co-expression network, which was composed of 43 lncRNA nodes, 253 mRNA nodes, 11 miRNA nodes, and 475 edges. Six lncRNAs in the ceRNA network were closely related to overall survival, and a three-lncRNA signature predicted survival of PAAD patients. Protein-protein interaction network data revealed that five genes were associated with overall survival. These results provide novel insight into the function of a lncRNA-associated ceRNA network in the pathogenesis of PAAD, and indicate that the identified three-lncRNA signature may serve as an independent prognostic marker in PAAD.

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Citations

May 1, 2020·World Journal of Gastroenterology : WJG·Tao XuBin Niu
Dec 1, 2020·World Journal of Gastrointestinal Oncology·Jin-Nian GeMin-Jie Wei
May 27, 2021·Transcription·K T Ramya DeviSanjana Prakash Hemdev
Nov 12, 2021·Frontiers in Oncology·Guangbing XiongRenyi Qin

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Methods Mentioned

BETA
Profiler

Software Mentioned

STRING
cluster Profiler
R
GOCircle
GOChord
TargetScan
Cytoscape
GOplot R package

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