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Tools and best practices for data processing in allelic expression analysis

Genome Biology

Sep 19, 2015

Stephane E CastelTuuli Lappalainen

Abstract

Allelic expression analysis has become important for integrating genome and transcriptome data to characterize various biological phenomena such as cis-regulatory variation and nonsense-mediated decay. We analyze the properties of allelic expression read count data and technical sources...read more

Mentioned in this Paper

Genome
Sequence Determinations, RNA
Nucleic Acid Sequencing
Gene Expression
Double Test
Computer Programs and Programming
Sequencing
Data Interpretation, Statistical
Nonsense Mediated mRNA Decay
Gene Regulatory Networks
87
1
450
Paper Details
References
  • References30
  • Citations51
123
  • References30
  • Citations51
12345...

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Tools and best practices for data processing in allelic expression analysis

Genome Biology

Sep 19, 2015

Stephane E CastelTuuli Lappalainen

PMID: 26381377

DOI: 10.1186/s13059-015-0762-6

Abstract

Allelic expression analysis has become important for integrating genome and transcriptome data to characterize various biological phenomena such as cis-regulatory variation and nonsense-mediated decay. We analyze the properties of allelic expression read count data and technical sources...read more

Mentioned in this Paper

Genome
Sequence Determinations, RNA
Nucleic Acid Sequencing
Gene Expression
Double Test
Computer Programs and Programming
Sequencing
Data Interpretation, Statistical
Nonsense Mediated mRNA Decay
Gene Regulatory Networks
87
1
450

Similar Papers Found In These Feeds

Open Access Genomics Journals

Discover the latest genomics research in this collection of the top open access genomics journals.

Gene Regulatory Networks

Gene regulatory networks are comprised of molecular regulators that interact with each other and other factors in a cell to regulate and modulate gene expression. Here is the latest research.

Related Papers

Genome Biology

From RNA-seq reads to differential expression results

Genome BiologyDecember 24, 2010
Alicia OshlackMatthew D Young
Bioinformatics

Mapping personal functional data to personal genomes

BioinformaticsOctober 19, 2011
Marcelo Rivas-AstrozaSheng Zhong
Paper Details
References
  • References30
  • Citations51
123
  • References30
  • Citations51
12345...
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