Towards a pathway definition of Parkinson's disease: a complex disorder with links to cancer, diabetes and inflammation

Neurogenetics
Linda B Moran, Manuel B Graeber

Abstract

We have previously established a first whole genome transcriptomic profile of sporadic Parkinson's disease (PD). After extensive brain tissue-based validation combined with cycles of iterative data analysis and by focusing on the most comparable cases of the cohort, we have refined our analysis and established a list of 892 highly dysregulated priority genes that are considered to form the core of the diseased Parkinsonian metabolic network. The substantia nigra pathways, now under scrutiny, contain more than 100 genes whose association with PD is known from the literature. Of those, more than 40 genes belong to the highly significantly dysregulated group identified in our dataset. Apart from the complete list of 892 priority genes, we present pathways revealing PD 'hub' as well as 'peripheral' network genes. The latter include Lewy body components or interact with known PD genes. Biological associations of PD with cancer, diabetes and inflammation are discussed and interactions of the priority genes with several drugs are provided. Our study illustrates the value of rigorous clinico-pathological correlation when analysing high-throughput data to make optimal use of the histopathological phenome, or morphonome which currently s...Continue Reading

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Datasets Mentioned

BETA
GSE8397
GSE3526

Methods Mentioned

BETA
chips

Software Mentioned

IDConverter
Pathway Architect
Affymetrix
Pathway
VMware Workstation
Windows
build
PathArt
PathwayAssist
ArrayAssist

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