tPatternHunter: gapped, fast and sensitive translated homology search

Bioinformatics
Derek KismanLi Wang

Abstract

New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx. The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/ bma@csd.uwo.ca.

References

Sep 1, 1997·Nucleic Acids Research·S F AltschulD J Lipman
Apr 6, 2002·Bioinformatics·Bin MaMing Li

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Citations

Nov 25, 2005·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Franco P PreparataKwok Pui Choi
Jul 25, 2007·Bioinformatics·Xuefeng CuiMing Li
Sep 7, 2007·Bioinformatics·Lucian Ilie, Silvana Ilie
Jun 25, 2008·Journal of Bioinformatics and Computational Biology·Zefeng ZhangMing Li
Aug 1, 2009·IEEE/ACM Transactions on Computational Biology and Bioinformatics·Mikhail RoytbergGregory Kucherov
Oct 19, 2006·IEEE/ACM Transactions on Computational Biology and Bioinformatics·Daniel G Brown

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