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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature Protocols

Aug 26, 2016

Mihaela PerteaSteven L Salzberg

Abstract

High-throughput sequencing of mRNA (RNA-seq) has become the standard method for measuring and comparing the levels of gene expression in a wide variety of species and conditions. RNA-seq experiments generate very large, complex data sets that demand fast, accurate and flexible software ...read more

Mentioned in this Paper

Computer Software
Genome
Genes
Sequence Determinations, RNA
Splice Variants, Protein
Nucleic Acid Sequencing
Gene Expression
Computer Programs and Programming
Sequencing
RNA Splicing
139
2
2022
Paper Details
References
  • References38
  • Citations176
12345...

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature Protocols

Aug 26, 2016

Mihaela PerteaSteven L Salzberg

PMID: 27560171

DOI: 10.1038/nprot.2016.095

Abstract

High-throughput sequencing of mRNA (RNA-seq) has become the standard method for measuring and comparing the levels of gene expression in a wide variety of species and conditions. RNA-seq experiments generate very large, complex data sets that demand fast, accurate and flexible software ...read more

Mentioned in this Paper

Computer Software
Genome
Genes
Sequence Determinations, RNA
Splice Variants, Protein
Nucleic Acid Sequencing
Gene Expression
Computer Programs and Programming
Sequencing
RNA Splicing
139
2
2022
Paper Details
References
  • References38
  • Citations176
12345...
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