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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature Protocols

Sep 1, 2016

Mihaela PerteaSteven L. Salzberg

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Abstract

High-throughput sequencing of mRNA (RNA-seq) has become the standard method for measuring and comparing the levels of gene expression in a wide variety of species and conditions. RNA-seq experiments generate very large, complex data sets that demand fast, accurate and flexible software ...read more

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References
    • References17
    • Citations49
    • References17
    • Citations49
  • Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

    Nature Protocols

    Sep 1, 2016

    Mihaela PerteaSteven L. Salzberg

    PMID: 27560171

    DOI: 10.1038/nprot.2016.095

    Abstract

    High-throughput sequencing of mRNA (RNA-seq) has become the standard method for measuring and comparing the levels of gene expression in a wide variety of species and conditions. RNA-seq experiments generate very large, complex data sets that demand fast, accurate and flexible software ...read more

    139
    2
    1833
    Paper Details
    References
    • References17
    • Citations49
    • References17
    • Citations49
  • Get paper from

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