Transcriptome and comparative gene expression analysis of Sogatella furcifera (Horváth) in response to southern rice black-streaked dwarf virus.

PloS One
Yi XuXueping Zhou

Abstract

The white backed planthopper (WBPH), Sogatella furcifera (Horváth), causes great damage to many crops by direct feeding or transmitting plant viruses. Southern rice black-streaked dwarf virus (SRBSDV), transmitted by WBPH, has become a great threat to rice production in East Asia. By de novo transcriptome assembling and massive parallel pyrosequencing, we constructed two transcriptomes of WBPH and profiled the alternation of gene expression in response to SRBSDV infection in transcriptional level. Over 25 million reads of high-quality DNA sequences and 81388 different unigenes were generated using Illumina technology from both viruliferous and non-viruliferous WBPH. WBPH has a very similar gene ontological distribution to other two closely related rice planthoppers, Nilaparvata lugens and Laodelphax striatellus. 7291 microsatellite loci were also predicted which could be useful for further evolutionary analysis. Furthermore, comparative analysis of the two transcriptomes generated from viruliferous and non-viruliferous WBPH provided a list of candidate transcripts that potentially were elicited as a response to viral infection. Pathway analyses of a subset of these transcripts indicated that SRBSDV infection may perturb primary...Continue Reading

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Citations

Apr 1, 2014·Genome Biology and Evolution·Bryan J CassoneMargaret G Redinbaugh
May 13, 2014·Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology·Ming He, Peng He
Aug 19, 2015·Proceedings of the National Academy of Sciences of the United States of America·Sotaro Chiba, Nobuhiro Suzuki
Sep 24, 2015·Journal of Separation Science·Li YangHuwei Liu
Jun 15, 2016·Annual Review of Phytopathology·Taiyun Wei, Yi Li
Jul 27, 2018·Annual Review of Virology·James E Schoelz, Lucy R Stewart
Apr 13, 2017·Proceedings of the National Academy of Sciences of the United States of America·Ida Bagus AndikaNobuhiro Suzuki

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Datasets Mentioned

BETA
SRP009194

Methods Mentioned

BETA
Illumina sequencing
genotyping
deubiquitination
PCR

Software Mentioned

BLASTX
ProScan
Blast2Go
Inter
TIGR Gene Indices ( TGI )
Perl script
BLAST
Short Oligonucleotide Analysis Package ( SOAP )
Solexa GA
InterProScan

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